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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0467500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant MuDR transposase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0245) R2 : 0.0393
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.222 (0.0515) R2dN8 : 0.0507 R2N8 : 0.0393
σ : 0.461
deviance : 97.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
93.1 0.453 2.94 -0.643 0.0177 0.00432 0.393 -1.99 0.0985 0.0377 25.2 1156 -- --
93.97 0.451 2.89 -0.168 0.0237 -0.204 0.26 -- 0.209 23.8 25.8 2583 -- --
93.51 0.45 2.95 -0.655 0.00392 0.0127 -- -1.76 0.0991 0.193 26.02 1480 -- --
94.24 0.452 2.89 -0.179 0.0305 -0.196 -- -- 0.21 20.4 25.86 2577 -- --
93.51 0.45 2.95 -0.662 -- 0.0167 -- -1.8 0.0976 -- 26.07 1480 -- --
95.55 0.458 2.89 -0.235 0.0155 -- -0.229 -- 0.197 12.8 -- -- -- --
95.72 0.458 2.89 -0.243 0.0337 -- -- -- 0.196 16.8 -- -- -- --
93.99 0.452 2.9 -0.191 -- -0.189 -- -- 0.16 -- 30.9 5516 -- --
94.31 0.452 2.87 -- 0.0126 -0.257 -- -- 0.299 19.8 29.3 11178 -- --
95.78 0.457 2.89 -0.244 -- -- -- -- 0.195 -- -- -- -- --
97.28 0.461 2.88 -- 0.0382 -- -- -- 0.223 16.6 -- -- -- --
93.76 0.451 2.85 -- -- -0.267 -- -- 0.331 -- 24.22 25853 -- --
97.36 0.461 2.88 -- -- -- -- -- 0.222 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.61 temperature 20.0 90 < th dose independent rect. 14 5
4 84.70 temperature 20.0 90 < th dose dependent rect. 17 2
5 84.71 temperature 20.0 90 < th dose independent rect. 17 2
9 84.75 wind 5.0 10 > th dose dependent rect. 20 1
12 84.78 wind 7.0 10 > th dose independent rect. 19 3
17 84.79 wind 7.0 10 > th dose dependent rect. 19 3
32 84.83 wind 7.0 10 > th dose independent rect. 19 1
39 84.86 temperature 20.0 90 < th dose dependent rect. 14 5
56 84.95 temperature 20.0 90 < th dose independent rect. 9 10
149 86.80 wind 5.0 90 > th dose dependent rect. 18 2
179 88.79 wind 5.0 90 > th dose independent rect. 18 1
197 89.37 wind 7.0 1440 > th dose independent rect. 3 1
199 89.37 wind 7.0 1440 > th dose dependent rect. 3 1
205 89.44 wind 7.0 1440 < th dose independent rect. 7 1
211 89.64 atmosphere 1005.0 90 > th dose dependent rect. 18 1
212 89.68 wind 1.0 10 < th dose dependent rect. 1 2
215 89.88 atmosphere 1005.0 90 > th dose dependent rect. 17 3
216 89.88 wind 1.0 10 < th dose dependent rect. 22 5
217 89.89 wind 1.0 270 < th dose dependent rect. 22 1
240 89.99 wind 7.0 1440 > th dose dependent rect. 7 3
245 90.02 wind 9.0 1440 > th dose independent rect. 9 1
257 90.02 wind 1.0 10 < th dose dependent rect. 12 15
274 90.12 wind 7.0 1440 < th dose independent rect. 7 3
287 90.19 wind 7.0 1440 < th dose independent rect. 5 5
303 90.24 temperature 20.0 10 < th dose dependent rect. 6 15
335 90.34 wind 7.0 1440 < th dose independent rect. 9 1
345 90.37 wind 1.0 30 < th dose dependent rect. 5 22
414 90.75 wind 7.0 10 < th dose independent sin 11 NA
446 90.86 precipitation 0.1 43200 > th dose independent rect. 4 15
447 90.86 precipitation 0.1 43200 < th dose independent rect. 4 15
448 90.86 precipitation 0.1 43200 < th dose dependent rect. 4 15
462 90.93 wind 1.0 270 < th dose independent rect. 22 1
474 90.96 precipitation 0.1 43200 > th dose dependent rect. 4 15
475 90.97 precipitation 0.1 43200 < th dose independent rect. 4 17
479 90.97 precipitation 0.1 43200 < th dose dependent rect. 4 17
496 91.02 wind 7.0 14400 > th dose dependent rect. 7 2
498 91.04 precipitation 0.1 43200 > th dose independent sin 1 NA
499 91.04 precipitation 0.1 43200 < th dose independent sin 1 NA
503 91.04 precipitation 0.1 43200 < th dose dependent sin 1 NA
507 91.05 precipitation 0.1 43200 > th dose independent rect. 6 12
510 91.05 precipitation 0.1 43200 > th dose dependent rect. 7 8
513 91.06 precipitation 0.1 43200 < th dose independent rect. 7 8
514 91.06 precipitation 0.1 43200 < th dose independent rect. 6 12
516 91.06 precipitation 0.1 43200 < th dose dependent rect. 7 8
517 91.06 precipitation 0.1 43200 < th dose dependent rect. 6 12
528 91.09 precipitation 0.1 43200 > th dose independent rect. 7 8
529 91.09 precipitation 0.1 43200 > th dose independent rect. 1 18
530 91.09 precipitation 0.1 43200 < th dose independent rect. 1 18
531 91.09 precipitation 0.1 43200 > th dose dependent rect. 6 11
532 91.09 precipitation 0.1 43200 < th dose dependent rect. 1 18
534 91.10 wind 9.0 43200 < th dose independent rect. 21 15
535 91.10 precipitation 0.1 43200 > th dose dependent sin 1 NA
571 91.15 precipitation 0.1 43200 > th dose dependent rect. 7 5
573 91.16 temperature 20.0 90 < th dose independent sin 22 NA
576 91.16 precipitation 0.1 43200 > th dose independent rect. 7 5
577 91.16 precipitation 0.1 43200 < th dose independent rect. 7 5
580 91.16 wind 9.0 43200 > th dose independent rect. 21 15
584 91.16 precipitation 0.1 43200 < th dose dependent rect. 7 5
589 91.17 wind 1.0 14400 < th dose independent rect. 15 8
596 91.18 temperature 20.0 90 > th dose independent sin 22 NA
598 91.18 wind 1.0 14400 > th dose independent rect. 15 8
618 91.20 precipitation 0.1 43200 < th dose independent rect. 20 19
621 91.20 precipitation 0.1 43200 < th dose dependent rect. 20 19
628 91.21 wind 1.0 14400 > th dose independent rect. 8 16
629 91.21 precipitation 0.1 43200 > th dose independent rect. 21 18
668 91.23 precipitation 0.1 43200 > th dose dependent rect. 24 17
669 91.23 precipitation 0.1 43200 > th dose dependent rect. 21 18
711 91.27 wind 1.0 43200 < th dose dependent rect. 16 5
725 91.28 temperature 20.0 30 < th dose independent rect. 7 1
729 91.28 wind 7.0 1440 < th dose independent rect. 24 10
736 91.28 temperature 20.0 30 < th dose dependent rect. 7 1
745 91.29 wind 1.0 14400 < th dose independent rect. 10 1
747 91.29 wind 1.0 10 < th dose independent rect. 24 2
752 91.29 precipitation 0.1 43200 > th dose independent rect. 18 18
753 91.29 precipitation 0.1 43200 < th dose independent rect. 18 18
762 91.29 precipitation 0.1 43200 < th dose dependent rect. 18 18
767 91.30 wind 9.0 43200 < th dose independent rect. 4 8
792 91.32 atmosphere 995.0 43200 > th dose independent rect. 7 1
793 91.32 atmosphere 995.0 43200 > th dose independent rect. 6 4
796 91.32 wind 9.0 43200 < th dose independent rect. 1 11
822 91.32 atmosphere 995.0 43200 < th dose dependent rect. 4 6
835 91.33 wind 1.0 14400 > th dose independent rect. 10 1
837 91.33 wind 7.0 1440 > th dose independent rect. 24 10
855 91.34 wind 1.0 14400 < th dose independent rect. 10 13
884 91.35 atmosphere 995.0 43200 < th dose dependent sin 3 NA
919 91.37 wind 9.0 43200 < th dose independent rect. 7 5
922 91.37 wind 9.0 43200 > th dose independent rect. 1 11
936 91.38 atmosphere 995.0 43200 > th dose independent rect. 5 8
938 91.38 temperature 20.0 90 > th dose independent rect. 11 10
953 91.38 wind 1.0 14400 < th dose dependent rect. 15 8
978 91.40 wind 9.0 43200 > th dose independent rect. 4 8
992 91.40 precipitation 0.1 43200 > th dose independent rect. 14 21
994 91.40 precipitation 0.1 43200 < th dose independent rect. 14 21