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Os12g0467300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.76 (0.0262) R2 : 0.718
β1 : 1.21 (0.0959) R2dD : 0.103 R2D : -0.21
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.87 (0.0559) R2dN8 : 0.929 R2N8 : 0.616
σ : 0.491
deviance : 110.63
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.64 0.435 7.75 1.27 0.541 -0.551 0.713 -0.479 1.89 3.15 69.17 1288 -- --
86.1 0.432 7.75 1.33 0.553 -0.556 0.645 -- 1.88 3.15 68.86 1280 -- --
87.24 0.435 7.75 1.27 0.541 -0.546 -- -0.332 1.89 3.25 69.35 1287 -- --
87.44 0.436 7.76 1.31 0.544 -0.564 -- -- 1.87 3.21 68.51 1280 -- --
93.65 0.451 7.75 1.25 -- -0.724 -- -0.644 1.91 -- 70 1847 -- --
98.52 0.465 7.75 1.2 0.445 -- 0.543 -- 1.86 3.56 -- -- -- --
99.42 0.467 7.76 1.2 0.449 -- -- -- 1.86 3.63 -- -- -- --
94.04 0.452 7.74 1.31 -- -0.819 -- -- 1.95 -- 70 1833 -- --
101.56 0.469 7.8 -- 0.457 -1.15 -- -- 1.66 3.67 63.44 47520 -- --
110.63 0.491 7.76 1.21 -- -- -- -- 1.87 -- -- -- -- --
137.09 0.548 7.79 -- 0.473 -- -- -- 1.73 3.61 -- -- -- --
110.15 0.489 7.81 -- -- -1.37 -- -- 1.65 -- 63.7 43645 -- --
149.52 0.571 7.79 -- -- -- -- -- 1.74 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.09 wind 3.0 43200 < th dose dependent rect. 5 1
3 84.45 wind 1.0 43200 < th dose independent rect. 5 2
6 84.58 wind 1.0 43200 > th dose independent rect. 5 2
8 84.76 wind 1.0 43200 > th dose dependent rect. 5 1
11 85.14 radiation 10.0 1440 < th dose dependent rect. 6 1
12 85.18 wind 1.0 43200 < th dose dependent rect. 3 10
14 85.32 humidity 70.0 1440 > th dose independent rect. 17 20
19 85.53 radiation 10.0 1440 < th dose dependent rect. 2 5
22 85.56 wind 1.0 43200 > th dose independent rect. 4 6
24 85.58 radiation 10.0 1440 < th dose dependent rect. 22 9
26 85.58 radiation 10.0 1440 < th dose dependent rect. 19 12
30 85.62 humidity 70.0 1440 < th dose independent rect. 15 22
31 85.62 radiation 1.0 1440 > th dose dependent rect. 5 2
33 85.66 wind 1.0 43200 < th dose independent rect. 4 6
68 85.88 radiation 40.0 1440 < th dose dependent rect. 6 1
69 85.90 wind 1.0 43200 < th dose independent rect. 2 11
72 85.90 radiation 10.0 1440 < th dose dependent rect. 17 15
81 85.96 radiation 40.0 1440 < th dose dependent rect. 2 5
89 86.01 humidity 70.0 1440 > th dose independent rect. 9 4
95 86.05 humidity 70.0 1440 < th dose independent rect. 9 10
124 86.12 radiation 40.0 1440 < th dose dependent rect. 21 10
134 86.15 radiation 40.0 1440 < th dose dependent rect. 19 12
150 86.16 wind 1.0 43200 < th dose dependent rect. 5 5
153 86.17 radiation 10.0 1440 < th dose independent rect. 15 19
189 86.21 humidity 70.0 1440 < th dose independent no NA NA
201 86.21 radiation 10.0 1440 < th dose independent rect. 17 17
261 86.31 humidity 70.0 1440 > th dose independent rect. 8 11
262 86.32 humidity 70.0 1440 < th dose independent rect. 9 4
264 86.32 humidity 70.0 1440 > th dose independent rect. 8 15
266 86.32 humidity 70.0 1440 > th dose independent rect. 8 20
276 86.33 precipitation 0.1 4320 < th dose independent rect. 24 17
281 86.33 precipitation 0.1 4320 < th dose dependent rect. 24 17
282 86.33 humidity 80.0 1440 < th dose dependent rect. 17 20
283 86.34 humidity 70.0 1440 < th dose independent sin 23 NA
285 86.34 precipitation 0.1 4320 > th dose independent rect. 24 17
296 86.36 humidity 70.0 1440 > th dose independent rect. 2 17
304 86.36 humidity 70.0 1440 > th dose independent rect. 2 22
309 86.36 precipitation 0.1 4320 > th dose dependent rect. 24 10
311 86.37 humidity 70.0 1440 > th dose independent no NA NA
387 86.38 humidity 80.0 1440 < th dose dependent rect. 15 22
388 86.39 radiation 10.0 1440 < th dose independent sin 11 NA
437 86.44 humidity 70.0 1440 < th dose independent rect. 11 23
443 86.45 precipitation 0.1 4320 > th dose independent rect. 24 10
451 86.46 radiation 10.0 1440 < th dose dependent sin 10 NA
459 86.49 precipitation 0.1 4320 < th dose independent rect. 24 10
461 86.49 precipitation 0.1 4320 < th dose dependent rect. 24 10
465 86.50 radiation 40.0 1440 < th dose dependent rect. 17 15
468 86.51 wind 9.0 43200 > th dose dependent rect. 11 2
498 86.55 precipitation 0.1 4320 > th dose dependent rect. 24 17
499 86.56 humidity 70.0 1440 > th dose independent sin 0 NA
514 86.58 wind 1.0 43200 < th dose independent rect. 1 8
532 86.62 precipitation 0.1 14400 < th dose independent rect. 14 2
535 86.62 precipitation 0.1 14400 < th dose dependent rect. 14 2
571 86.68 wind 1.0 43200 < th dose independent rect. 23 11
572 86.68 humidity 70.0 1440 > th dose independent rect. 11 23
576 86.69 precipitation 0.1 14400 > th dose independent rect. 14 2
580 86.69 precipitation 0.1 14400 > th dose dependent rect. 14 2
588 86.70 humidity 70.0 1440 > th dose independent rect. 3 10
591 86.70 humidity 70.0 1440 > th dose independent rect. 22 15
595 86.70 humidity 90.0 1440 < th dose dependent sin 5 NA
597 86.70 precipitation 0.1 4320 > th dose dependent rect. 24 14
616 86.73 precipitation 0.1 4320 > th dose independent rect. 24 14
627 86.76 radiation 10.0 1440 < th dose independent rect. 5 5
629 86.76 radiation 10.0 1440 < th dose independent rect. 3 7
639 86.77 radiation 10.0 1440 < th dose independent rect. 22 12
651 86.78 precipitation 0.1 4320 < th dose independent rect. 24 14
662 86.78 precipitation 0.1 4320 < th dose dependent rect. 24 14
668 86.79 wind 1.0 43200 < th dose independent rect. 23 8
674 86.80 humidity 70.0 1440 < th dose dependent rect. 12 1
677 86.81 wind 1.0 43200 > th dose independent rect. 1 8
699 86.82 radiation 10.0 1440 < th dose dependent rect. 3 8
702 86.82 radiation 10.0 1440 < th dose dependent rect. 21 14
704 86.82 radiation 10.0 1440 < th dose dependent rect. 19 16
707 86.82 humidity 80.0 1440 < th dose dependent rect. 21 23
712 86.83 radiation 10.0 1440 < th dose dependent rect. 5 6
714 86.83 humidity 90.0 1440 < th dose dependent rect. 2 11
715 86.83 radiation 10.0 1440 < th dose dependent rect. 23 12
719 86.84 wind 1.0 43200 < th dose independent sin 6 NA
724 86.84 humidity 80.0 1440 < th dose dependent no NA NA
728 86.84 humidity 80.0 1440 < th dose dependent rect. 7 22
731 86.84 humidity 80.0 1440 < th dose dependent rect. 5 23
735 86.85 wind 1.0 43200 > th dose independent rect. 2 11
747 86.86 humidity 70.0 1440 < th dose dependent rect. 9 9
778 86.87 humidity 80.0 1440 < th dose dependent rect. 1 23
819 86.89 humidity 80.0 1440 < th dose dependent rect. 9 23
820 86.90 wind 9.0 43200 < th dose independent rect. 11 2
932 86.97 humidity 70.0 4320 < th dose independent rect. 11 1
935 86.97 humidity 70.0 1440 < th dose dependent sin 23 NA
985 87.00 wind 9.0 43200 > th dose independent rect. 11 2