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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0466800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0208) R2 : 0.000509
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0211 (0.0438) R2dN8 : 0.000658 R2N8 : 0.000509
σ : 0.391
deviance : 70.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
64.73 0.378 3.32 0.205 0.205 0.248 -0.112 1.19 -0.0455 7.27 91.32 5897 -- --
66.72 0.38 3.32 0.135 0.217 0.298 -0.101 -- -0.0715 7.56 97.37 6740 -- --
64.76 0.375 3.32 0.202 0.205 0.247 -- 1.19 -0.0452 7.35 91.06 5913 -- --
66.74 0.38 3.32 0.13 0.219 0.296 -- -- -0.07 7.61 92 6746 -- --
66.98 0.381 3.33 0.204 -- 0.251 -- 1.17 -0.0427 -- 91 5838 -- --
67.77 0.386 3.31 0.105 0.204 -- -0.129 -- -0.0132 7.2 -- -- -- --
67.81 0.386 3.31 0.102 0.203 -- -- -- -0.0128 7.31 -- -- -- --
68.88 0.387 3.33 0.142 -- 0.285 -- -- -0.0698 -- 92.01 7128 -- --
67.19 0.382 3.32 -- 0.22 0.271 -- -- -0.0765 7.54 91 6713 -- --
70.01 0.391 3.31 0.106 -- -- -- -- -0.00936 -- -- -- -- --
68.09 0.386 3.31 -- 0.204 -- -- -- -0.0242 7.28 -- -- -- --
69.38 0.388 3.33 -- -- 0.254 -- -- -0.0769 -- 91.05 7118 -- --
70.3 0.391 3.31 -- -- -- -- -- -0.0211 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 59.98 atmosphere 1010.0 30 < th dose dependent rect. 2 1
3 60.19 wind 3.0 10 < th dose dependent rect. 2 1
5 60.24 wind 3.0 10 < th dose independent rect. 2 1
9 60.28 temperature 25.0 10 < th dose independent rect. 2 1
18 60.31 temperature 15.0 10 > th dose dependent rect. 2 1
22 60.32 temperature 10.0 30 > th dose independent rect. 2 1
25 60.32 humidity 50.0 30 > th dose independent rect. 2 1
28 60.32 atmosphere 995.0 30 > th dose independent rect. 2 1
29 60.32 atmosphere 1010.0 30 < th dose independent rect. 2 1
31 60.32 radiation 1.0 30 < th dose independent rect. 2 1
36 60.32 precipitation 0.1 30 < th dose independent rect. 2 1
37 60.32 temperature 10.0 30 > th dose independent rect. 3 23
39 60.32 radiation 1.0 30 < th dose dependent rect. 2 1
44 60.32 precipitation 0.1 30 < th dose dependent rect. 2 1
46 60.34 temperature 30.0 30 < th dose dependent rect. 2 1
47 60.34 humidity 50.0 30 > th dose dependent rect. 2 1
73 60.38 atmosphere 1005.0 10 > th dose dependent rect. 2 1
91 60.46 atmosphere 995.0 30 > th dose dependent rect. 2 1
95 60.53 wind 1.0 30 > th dose independent rect. 2 1
96 60.53 atmosphere 1005.0 30 > th dose independent rect. 2 1
97 60.53 wind 9.0 30 < th dose independent rect. 3 23
105 60.77 atmosphere 995.0 30 > th dose independent rect. 3 23
122 62.41 precipitation 0.1 30 < th dose independent rect. 3 23
123 62.41 precipitation 0.1 30 < th dose dependent rect. 3 23
128 62.62 atmosphere 995.0 720 > th dose independent rect. 23 16
130 62.69 temperature 10.0 720 > th dose independent rect. 15 8
131 62.69 temperature 10.0 720 > th dose independent rect. 23 16
132 62.73 precipitation 0.1 720 < th dose independent rect. 15 8
133 62.73 precipitation 0.1 720 < th dose dependent rect. 15 8
134 62.79 radiation 1.0 43200 < th dose dependent rect. 3 1
137 62.86 temperature 10.0 720 > th dose independent rect. 3 8
138 62.86 atmosphere 995.0 720 > th dose independent rect. 3 8
139 62.86 temperature 10.0 720 > th dose independent rect. 11 16
144 63.04 wind 9.0 720 < th dose independent rect. 3 8
150 63.17 wind 9.0 4320 < th dose independent rect. 3 1
151 63.18 humidity 80.0 14400 < th dose dependent rect. 3 6
161 63.24 temperature 10.0 1440 > th dose independent rect. 3 1
164 63.24 temperature 30.0 1440 < th dose independent rect. 3 1
168 63.24 humidity 50.0 1440 > th dose independent rect. 3 1
177 63.24 atmosphere 995.0 1440 > th dose independent rect. 3 1
178 63.24 radiation 1.0 1440 < th dose independent rect. 3 1
198 63.24 temperature 10.0 1440 > th dose independent rect. 4 23
201 63.24 radiation 1.0 1440 < th dose dependent rect. 3 1
214 63.25 atmosphere 1015.0 720 < th dose independent rect. 3 8
220 63.36 humidity 50.0 30 > th dose independent rect. 3 23
221 63.37 precipitation 0.1 720 < th dose independent rect. 11 16
222 63.37 precipitation 0.1 720 < th dose dependent rect. 11 16
223 63.38 humidity 90.0 90 < th dose independent rect. 2 1
232 63.45 humidity 50.0 720 > th dose independent rect. 3 8
233 63.49 radiation 40.0 720 < th dose independent rect. 15 8
281 63.91 humidity 80.0 720 > th dose dependent rect. 3 1
288 63.97 humidity 70.0 14400 > th dose independent rect. 8 1
290 63.97 temperature 25.0 720 > th dose dependent rect. 3 5
291 63.98 wind 9.0 720 < th dose independent rect. 15 8
312 64.17 humidity 90.0 90 < th dose independent rect. 1 4
314 64.18 humidity 70.0 14400 > th dose independent rect. 4 5
316 64.19 humidity 90.0 720 > th dose independent rect. 3 1
317 64.19 humidity 70.0 14400 > th dose independent rect. 24 9
318 64.19 humidity 70.0 14400 > th dose independent rect. 22 11
319 64.19 temperature 10.0 30 > th dose dependent rect. 3 23
329 64.22 wind 1.0 14400 < th dose dependent rect. 6 1
332 64.23 humidity 70.0 14400 < th dose independent rect. 8 1
349 64.38 wind 9.0 720 < th dose independent rect. 23 16
350 64.38 atmosphere 1015.0 30 < th dose independent rect. 3 23
352 64.40 wind 1.0 90 < th dose dependent rect. 8 1
370 64.48 wind 3.0 14400 > th dose independent rect. 10 1
373 64.49 humidity 70.0 14400 < th dose independent rect. 20 14
375 64.50 humidity 70.0 14400 < th dose independent rect. 6 4
377 64.50 temperature 25.0 720 > th dose independent rect. 3 6
389 64.52 wind 5.0 14400 < th dose independent rect. 11 1
391 64.53 humidity 90.0 90 < th dose independent rect. 1 9
393 64.53 wind 9.0 30 < th dose dependent rect. 3 23
410 64.58 humidity 70.0 1440 < th dose independent rect. 10 1
411 64.58 wind 5.0 14400 < th dose dependent rect. 10 2
414 64.59 temperature 25.0 720 > th dose dependent rect. 24 9
444 64.66 precipitation 0.1 720 < th dose independent rect. 3 8
448 64.66 precipitation 0.1 720 < th dose dependent rect. 3 8
457 64.71 precipitation 0.1 720 < th dose independent rect. 23 16
461 64.71 precipitation 0.1 720 < th dose dependent rect. 23 16
462 64.72 temperature 25.0 30 > th dose dependent rect. 14 21
463 64.73 wind 1.0 90 < th dose independent rect. 8 1
465 64.74 wind 1.0 14400 < th dose independent rect. 6 1
471 64.76 temperature 25.0 30 > th dose dependent rect. 16 19
484 64.81 wind 1.0 30 > th dose dependent rect. 2 1
488 64.82 wind 5.0 14400 < th dose independent rect. 10 5
489 64.82 humidity 60.0 4320 > th dose dependent rect. 3 6
490 64.83 wind 3.0 14400 > th dose dependent rect. 11 1
497 64.85 wind 1.0 10 < th dose independent rect. 6 21
515 64.90 radiation 40.0 90 < th dose independent rect. 13 14
519 64.91 humidity 70.0 1440 > th dose independent rect. 10 1
521 64.91 wind 5.0 14400 > th dose independent rect. 10 5
523 64.91 wind 1.0 14400 < th dose dependent rect. 4 4
524 64.91 temperature 25.0 30 > th dose dependent rect. 24 11
526 64.92 humidity 50.0 720 > th dose independent rect. 23 16
532 64.93 radiation 40.0 90 > th dose independent rect. 14 21
553 64.98 temperature 10.0 720 > th dose dependent rect. 3 1
564 65.01 humidity 90.0 720 < th dose independent rect. 1 3
571 65.02 wind 1.0 14400 < th dose independent rect. 4 4
573 65.02 radiation 10.0 30 < th dose independent rect. 3 23
579 65.03 precipitation 0.1 14400 > th dose independent rect. 24 8
589 65.04 humidity 90.0 10 > th dose independent rect. 24 3
590 65.04 precipitation 0.1 14400 < th dose independent rect. 24 8
595 65.04 precipitation 0.1 14400 < th dose dependent rect. 24 8
598 65.04 humidity 50.0 4320 > th dose dependent rect. 23 13
600 65.05 wind 1.0 14400 > th dose independent rect. 5 2
603 65.05 atmosphere 995.0 720 > th dose independent rect. 15 8
616 65.07 wind 1.0 720 > th dose independent rect. 15 8
627 65.08 temperature 20.0 90 > th dose independent rect. 3 3
635 65.09 wind 1.0 14400 > th dose independent rect. 4 4
651 65.10 wind 1.0 10 < th dose independent rect. 12 15
652 65.10 humidity 50.0 4320 > th dose dependent sin 6 NA
659 65.11 humidity 90.0 4320 < th dose independent rect. 4 5
673 65.11 radiation 10.0 30 < th dose dependent rect. 3 23
679 65.12 wind 3.0 14400 > th dose dependent rect. 10 5
680 65.12 precipitation 0.1 14400 > th dose dependent rect. 24 8
688 65.13 radiation 40.0 90 > th dose independent rect. 9 2
693 65.13 atmosphere 995.0 720 > th dose independent rect. 11 16
694 65.13 humidity 90.0 90 < th dose independent rect. 1 22
747 65.16 wind 1.0 10 < th dose independent rect. 8 19
756 65.17 atmosphere 995.0 720 > th dose independent rect. 8 7
775 65.17 humidity 90.0 4320 < th dose dependent rect. 23 16
783 65.18 temperature 20.0 720 > th dose dependent rect. 3 1
784 65.18 humidity 50.0 14400 > th dose dependent rect. 8 1
814 65.20 atmosphere 1015.0 1440 < th dose independent rect. 3 1
821 65.20 humidity 90.0 4320 < th dose dependent sin 6 NA
841 65.21 humidity 90.0 90 < th dose dependent rect. 2 1
906 65.23 humidity 60.0 14400 < th dose dependent rect. 12 1
913 65.23 humidity 90.0 4320 < th dose dependent rect. 3 12
914 65.23 temperature 25.0 30 > th dose dependent rect. 21 14
923 65.24 wind 1.0 10 < th dose independent rect. 17 10
952 65.25 temperature 25.0 4320 > th dose dependent rect. 6 1
977 65.26 wind 1.0 4320 < th dose dependent rect. 19 3
979 65.26 temperature 25.0 30 > th dose dependent rect. 4 7
998 65.27 wind 1.0 10 < th dose independent rect. 21 6