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Os12g0460800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein kinase AFC2 (EC 2.7.1.-).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.0171) R2 : 0.71
β1 : -1.74 (0.0626) R2dD : 0.511 R2D : 0.478
β2 : 0.787 (0.0416) R2dC : 0.228 R2C : 0.21
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0836 (0.0365) R2dN8 : 0.00448 R2N8 : -0.0138
σ : 0.322
deviance : 47.17
__
_____
C
peak time of C : 2.18
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
40.26 0.298 12.3 -1.77 0.531 0.379 0.0213 1.22 -0.0745 1.98 52.97 11 -- --
42.27 0.303 12.3 -1.72 0.548 0.409 0.712 -- -0.0684 1.92 49 12 -- --
40.26 0.296 12.3 -1.77 0.531 0.378 -- 1.23 -0.0749 1.98 52.98 11 -- --
44.14 0.309 12.3 -1.74 0.529 0.482 -- -- -0.0736 1.98 44.69 24 -- --
47.36 0.322 12.3 -1.76 -- 0.872 -- 1.2 -0.0565 -- 53.18 12 -- --
44.76 0.314 12.3 -1.72 0.785 -- 0.801 -- -0.0788 2.13 -- -- -- --
47.17 0.322 12.3 -1.74 0.787 -- -- -- -0.0836 2.18 -- -- -- --
51.1 0.334 12.3 -1.73 -- 0.904 -- -- -0.0538 -- 53.18 12 -- --
123.44 0.517 12.2 -- 0.47 0.548 -- -- 0.121 1.86 39.69 24 -- --
84.17 0.429 12.3 -1.71 -- -- -- -- -0.0647 -- -- -- -- --
127.16 0.527 12.2 -- 0.754 -- -- -- 0.11 2.13 -- -- -- --
129.48 0.53 12.2 -- -- 1.06 -- -- 0.134 -- 36.85 23 -- --
161.22 0.593 12.2 -- -- -- -- -- 0.125 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.91 humidity 80.0 10 > th dose dependent rect. 6 14
18 37.82 humidity 80.0 10 > th dose independent rect. 6 14
26 38.00 humidity 80.0 30 > th dose dependent sin 22 NA
45 38.25 radiation 1.0 270 < th dose dependent rect. 5 13
62 38.46 humidity 80.0 10 > th dose independent rect. 6 16
69 38.51 humidity 90.0 90 > th dose independent sin 23 NA
74 38.53 humidity 90.0 4320 > th dose independent rect. 12 2
83 38.56 radiation 1.0 270 < th dose independent rect. 5 13
110 38.69 radiation 1.0 270 < th dose independent rect. 4 15
154 38.90 humidity 90.0 90 < th dose independent sin 23 NA
157 38.91 radiation 1.0 270 > th dose independent sin 0 NA
160 38.92 radiation 1.0 270 < th dose independent sin 1 NA
168 38.95 humidity 90.0 4320 > th dose dependent rect. 13 1
192 39.05 precipitation 0.1 4320 > th dose independent rect. 5 12
193 39.05 precipitation 0.1 4320 < th dose independent rect. 5 12
194 39.05 precipitation 0.1 4320 < th dose dependent rect. 5 12
212 39.09 precipitation 0.1 4320 > th dose dependent rect. 5 12
215 39.10 radiation 40.0 270 < th dose dependent rect. 13 20
219 39.12 radiation 1.0 270 < th dose dependent rect. 4 15
230 39.17 precipitation 0.1 4320 > th dose dependent rect. 5 3
236 39.18 humidity 80.0 10 < th dose independent sin 23 NA
240 39.19 humidity 80.0 10 < th dose independent rect. 9 9
241 39.19 humidity 90.0 90 < th dose independent rect. 7 10
244 39.19 radiation 30.0 270 < th dose dependent rect. 14 18
246 39.20 precipitation 0.1 4320 > th dose independent rect. 5 3
257 39.22 precipitation 0.1 4320 > th dose dependent rect. 5 5
260 39.23 radiation 20.0 90 < th dose dependent rect. 5 18
271 39.26 precipitation 0.1 270 < th dose independent rect. 18 23
274 39.26 precipitation 0.1 270 < th dose dependent rect. 18 23
278 39.27 radiation 20.0 10 < th dose dependent rect. 6 16
286 39.29 precipitation 0.1 4320 > th dose independent rect. 5 1
287 39.29 precipitation 0.1 4320 > th dose independent rect. 5 5
297 39.31 precipitation 0.1 4320 > th dose dependent rect. 5 1
302 39.32 temperature 10.0 90 > th dose dependent rect. 9 8
313 39.34 precipitation 0.1 4320 < th dose independent rect. 10 7
315 39.34 precipitation 0.1 4320 < th dose dependent rect. 10 7
321 39.36 precipitation 0.1 4320 > th dose independent rect. 5 9
325 39.36 radiation 30.0 90 < th dose dependent rect. 17 17
330 39.37 radiation 10.0 90 < th dose independent rect. 5 17
331 39.37 radiation 20.0 270 < th dose independent rect. 13 20
336 39.38 temperature 15.0 1440 > th dose independent rect. 10 8
340 39.39 precipitation 0.1 4320 < th dose independent rect. 5 1
341 39.39 radiation 20.0 90 < th dose independent rect. 17 17
343 39.39 precipitation 0.1 4320 > th dose dependent rect. 16 1
344 39.39 precipitation 0.1 4320 < th dose dependent rect. 5 1
359 39.40 humidity 90.0 30 < th dose dependent rect. 24 17
363 39.41 humidity 80.0 10 < th dose independent rect. 6 12
381 39.44 humidity 50.0 10 > th dose dependent rect. 17 17
385 39.45 precipitation 0.1 4320 < th dose independent rect. 5 3
390 39.45 precipitation 0.1 4320 < th dose dependent rect. 5 3
391 39.45 precipitation 0.1 4320 > th dose dependent rect. 5 8
407 39.48 precipitation 0.1 4320 > th dose independent rect. 10 7
410 39.48 precipitation 0.1 4320 > th dose dependent rect. 14 3
424 39.49 humidity 90.0 30 < th dose dependent rect. 22 19
426 39.49 humidity 50.0 10 > th dose dependent rect. 1 23
439 39.51 radiation 1.0 270 < th dose dependent sin 0 NA
447 39.52 humidity 90.0 30 < th dose dependent rect. 7 10
475 39.56 radiation 10.0 270 < th dose dependent rect. 3 17
481 39.58 temperature 20.0 14400 < th dose independent rect. 19 1
490 39.59 humidity 80.0 1440 < th dose independent rect. 11 2
491 39.59 radiation 20.0 270 < th dose independent rect. 14 18
520 39.60 humidity 90.0 30 < th dose dependent rect. 19 23
524 39.61 humidity 80.0 10 < th dose independent rect. 1 17
550 39.65 wind 3.0 14400 > th dose independent rect. 3 1
588 39.69 precipitation 0.1 4320 < th dose independent rect. 16 1
590 39.69 wind 3.0 14400 > th dose independent rect. 21 9
593 39.69 precipitation 0.1 4320 < th dose dependent rect. 16 1
619 39.71 humidity 90.0 10 < th dose dependent rect. 9 9
622 39.71 humidity 50.0 10 > th dose dependent rect. 14 22
646 39.74 precipitation 0.1 4320 > th dose independent rect. 16 1
648 39.74 wind 3.0 14400 < th dose independent rect. 21 9
656 39.75 wind 3.0 14400 < th dose independent rect. 3 1
681 39.78 precipitation 0.1 270 > th dose independent sin 1 NA
699 39.80 precipitation 0.1 4320 < th dose independent sin 2 NA
704 39.80 precipitation 0.1 4320 < th dose dependent sin 2 NA
710 39.81 precipitation 0.1 4320 > th dose independent sin 2 NA
711 39.81 temperature 20.0 14400 > th dose independent rect. 18 1
730 39.82 radiation 10.0 30 < th dose dependent sin 21 NA
736 39.82 wind 1.0 14400 > th dose dependent rect. 20 11
744 39.83 wind 3.0 14400 < th dose independent rect. 24 5
780 39.85 humidity 90.0 10 < th dose dependent sin 23 NA
805 39.87 humidity 80.0 1440 > th dose dependent rect. 8 6
818 39.88 wind 3.0 14400 > th dose independent rect. 24 6
827 39.88 radiation 40.0 270 < th dose dependent rect. 3 17
836 39.89 radiation 40.0 270 < th dose independent rect. 3 17
849 39.90 wind 9.0 14400 < th dose dependent rect. 21 9
868 39.91 wind 9.0 14400 < th dose dependent rect. 20 11
925 39.95 radiation 20.0 90 < th dose dependent rect. 1 23
964 39.98 precipitation 0.1 4320 > th dose independent rect. 3 16
984 39.99 precipitation 0.1 4320 < th dose independent rect. 3 16
995 39.99 precipitation 0.1 4320 < th dose dependent rect. 3 16
997 39.99 humidity 50.0 10 > th dose dependent rect. 17 23