Os12g0459300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os12g0459300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.49 | 0.442 | 10.2 | -0.934 | 0.37 | 0.768 | -0.0132 | 0.158 | -0.238 | 4.25 | 30.1 | 242 | -- | -- |
| 88.49 | 0.438 | 10.2 | -0.921 | 0.37 | 0.785 | -0.00481 | -- | -0.237 | 4.26 | 30.04 | 241 | -- | -- |
| 88.49 | 0.438 | 10.2 | -0.933 | 0.37 | 0.769 | -- | 0.145 | -0.239 | 4.26 | 30.1 | 241 | -- | -- |
| 88.49 | 0.438 | 10.2 | -0.921 | 0.37 | 0.784 | -- | -- | -0.237 | 4.26 | 30.04 | 241 | -- | -- |
| 93.69 | 0.451 | 10.1 | -0.969 | -- | 0.856 | -- | 0.786 | -0.194 | -- | 29.5 | 267 | -- | -- |
| 101.96 | 0.473 | 10.1 | -1.03 | 0.626 | -- | 0.614 | -- | -0.193 | 4.91 | -- | -- | -- | -- |
| 102.83 | 0.475 | 10.1 | -1.03 | 0.629 | -- | -- | -- | -0.197 | 4.66 | -- | -- | -- | -- |
| 93.51 | 0.45 | 10.2 | -0.871 | -- | 0.978 | -- | -- | -0.213 | -- | 29.74 | 256 | -- | -- |
| 110.29 | 0.489 | 10.1 | -- | 0.274 | 0.93 | -- | -- | -0.156 | 4.25 | 30 | 238 | -- | -- |
| 123.84 | 0.52 | 10.1 | -1.01 | -- | -- | -- | -- | -0.18 | -- | -- | -- | -- | -- |
| 130.85 | 0.535 | 10.1 | -- | 0.61 | -- | -- | -- | -0.0818 | 4.71 | -- | -- | -- | -- |
| 113.22 | 0.496 | 10.1 | -- | -- | 1.08 | -- | -- | -0.124 | -- | 29.7 | 261 | -- | -- |
| 150.59 | 0.573 | 10.1 | -- | -- | -- | -- | -- | -0.0684 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.85 | temperature | 30 | 270 | < th | dose independent | sin | 2 | NA |
| 3 | 85.96 | temperature | 30 | 270 | > th | dose independent | rect. | 10 | 6 |
| 4 | 85.96 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 13 |
| 6 | 86.14 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 22 |
| 24 | 86.33 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 23 |
| 47 | 86.97 | temperature | 30 | 270 | > th | dose independent | sin | 1 | NA |
| 54 | 87.12 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 23 |
| 74 | 87.81 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 4 |
| 129 | 88.62 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 132 | 88.67 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 226 | 88.70 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 23 |
| 244 | 88.77 | temperature | 30 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 247 | 88.78 | temperature | 30 | 270 | > th | dose dependent | sin | 5 | NA |
| 252 | 88.89 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 12 |
| 258 | 88.96 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 23 |
| 264 | 89.06 | temperature | 30 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 296 | 89.14 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 9 |
| 319 | 89.43 | temperature | 30 | 270 | < th | dose independent | rect. | 18 | 23 |
| 366 | 89.83 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 1 |
| 380 | 89.99 | temperature | 30 | 90 | > th | dose dependent | sin | 23 | NA |
| 510 | 90.49 | temperature | 30 | 90 | > th | dose dependent | no | NA | NA |
| 620 | 90.55 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 10 |
| 622 | 90.56 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 8 |
| 655 | 90.66 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 19 |
| 740 | 90.85 | temperature | 30 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 789 | 90.96 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 16 |
| 791 | 90.96 | temperature | 30 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 922 | 91.02 | temperature | 25 | 30 | > th | dose dependent | rect. | 13 | 5 |