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Os12g0458900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.55 (0.0383) R2 : 0.685
β1 : -1.89 (0.141) R2dD : 0.132 R2D : 0.107
β2 : 1.72 (0.106) R2dC : 0.221 R2C : 0.362
β3 : -2.45 (0.18) R2dE : 0.155 R2E : 0.304
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.567 (0.0817) R2dN8 : 0.0433 R2N8 : 0.00408
σ : 0.716
deviance : 236.06
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_____
C
peak time of C : 20.4
E
wheather : wind
threshold : 2.548
memory length : 108
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.94
open length of G : 3.03

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
229.04 0.711 6.52 -1.63 1.78 -3.04 1.12 5.29 -0.594 20.3 2.016 106 3.95 3
235.45 0.715 6.53 -1.72 1.74 -2.4 0.917 -- -0.51 20.3 2.63 106 3.95 3.04
232.16 0.71 6.51 -1.66 1.77 -3.09 -- 5.4 -0.59 20.3 1.911 104 4.02 2.94
236.06 0.716 6.55 -1.89 1.72 -2.45 -- -- -0.567 20.4 2.548 108 3.94 3.03
366.38 0.891 6.42 -1.5 -- -3.73 -- 5.47 -0.53 -- 2.725 109 3.77 3.63
314.13 0.831 6.55 -1.99 2.4 -- 1.29 -- -0.526 19.6 -- -- -- --
318.82 0.836 6.55 -2.02 2.4 -- -- -- -0.524 19.6 -- -- -- --
275.04 0.772 6.51 -1.95 -- -2.72 -- -- -0.605 -- 5.948 472 2.45 3.05
330.3 0.846 6.51 -- 1.79 -2.41 -- -- -0.422 20.3 2.254 105 3.95 3.11
628.88 1.17 6.49 -2.05 -- -- -- -- -0.56 -- -- -- -- --
426.38 0.966 6.5 -- 2.42 -- -- -- -0.299 19.6 -- -- -- --
365.34 0.89 6.39 -- -- -2.68 -- -- -0.147 -- 6.862 451 1.83 3.92
740.13 1.27 6.44 -- -- -- -- -- -0.332 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 237.10 wind 3.0 90 < th dose dependent rect. 4 3
2 237.70 wind 1.0 270 < th dose independent rect. 4 1
3 238.76 wind 1.0 270 < th dose dependent rect. 4 1
7 241.94 wind 1.0 90 < th dose independent rect. 4 3
8 242.43 humidity 60.0 30 > th dose dependent rect. 8 20
14 243.54 wind 3.0 270 < th dose independent rect. 2 4
17 244.02 humidity 80.0 1440 < th dose independent rect. 1 11
19 244.07 wind 5.0 270 < th dose dependent rect. 2 4
20 244.20 temperature 15.0 90 > th dose independent rect. 4 17
38 245.37 wind 3.0 10 < th dose dependent rect. 4 4
43 245.57 temperature 10.0 90 > th dose dependent rect. 4 17
53 246.33 humidity 80.0 1440 < th dose independent sin 6 NA
62 246.78 humidity 60.0 1440 > th dose dependent rect. 7 6
64 246.93 humidity 80.0 1440 > th dose independent rect. 2 10
92 247.62 temperature 15.0 270 > th dose independent rect. 24 23
93 247.65 wind 1.0 90 < th dose independent rect. 4 6
96 247.72 humidity 80.0 720 < th dose dependent rect. 18 14
109 248.02 radiation 1.0 10 > th dose independent rect. 5 1
120 248.04 humidity 90.0 90 > th dose dependent rect. 4 1
129 248.28 radiation 20.0 4320 > th dose dependent rect. 6 2
147 248.43 humidity 70.0 14400 < th dose dependent rect. 18 4
175 248.74 humidity 80.0 1440 > th dose independent sin 5 NA
184 249.02 temperature 10.0 10 > th dose dependent rect. 4 19
185 249.04 humidity 70.0 14400 < th dose independent rect. 18 4
194 249.04 wind 1.0 90 < th dose dependent rect. 4 17
198 249.14 radiation 1.0 10 > th dose independent sin 11 NA
201 249.15 wind 1.0 90 < th dose dependent rect. 4 11
216 249.38 humidity 90.0 1440 < th dose dependent rect. 2 11
219 249.43 temperature 15.0 270 > th dose independent rect. 1 20
223 249.48 humidity 50.0 90 > th dose dependent rect. 21 7
226 249.50 radiation 1.0 10 < th dose independent sin 11 NA
249 249.92 temperature 15.0 90 > th dose independent rect. 5 23
299 250.82 precipitation 0.1 270 < th dose independent rect. 2 4
300 250.82 precipitation 0.1 270 < th dose dependent rect. 2 4
312 250.93 humidity 70.0 14400 > th dose independent rect. 19 10
317 250.96 wind 3.0 10 < th dose dependent rect. 5 1
321 251.00 precipitation 0.1 90 < th dose independent rect. 4 17
322 251.00 precipitation 0.1 90 < th dose dependent rect. 4 17
325 251.11 humidity 70.0 14400 > th dose independent rect. 19 2
346 251.17 wind 1.0 90 < th dose independent rect. 4 17
360 251.35 humidity 80.0 1440 < th dose dependent sin 9 NA
362 251.38 humidity 90.0 1440 < th dose dependent sin 5 NA
374 251.60 wind 1.0 90 < th dose independent rect. 4 13
406 252.01 wind 7.0 90 < th dose independent rect. 21 7
407 252.01 radiation 40.0 1440 < th dose dependent rect. 24 6
415 252.16 radiation 10.0 1440 < th dose dependent rect. 18 12
419 252.21 radiation 1.0 90 < th dose dependent rect. 21 7
422 252.22 temperature 10.0 90 > th dose independent rect. 21 7
423 252.22 temperature 30.0 90 < th dose independent rect. 21 7
424 252.22 humidity 50.0 90 > th dose independent rect. 21 7
427 252.22 atmosphere 995.0 90 > th dose independent rect. 21 7
428 252.22 radiation 1.0 90 < th dose independent rect. 21 7
434 252.22 atmosphere 1015.0 90 < th dose independent rect. 4 17
439 252.24 humidity 80.0 1440 < th dose dependent rect. 18 18
452 252.38 wind 9.0 90 < th dose independent rect. 4 17
473 252.58 radiation 20.0 4320 < th dose independent rect. 24 8
492 252.74 radiation 30.0 1440 > th dose dependent rect. 13 20
495 252.77 radiation 1.0 10 < th dose independent rect. 21 17
497 252.77 radiation 40.0 1440 > th dose dependent sin 12 NA
509 252.92 precipitation 0.1 270 < th dose independent rect. 3 2
511 252.92 humidity 50.0 1440 > th dose dependent sin 3 NA
512 252.92 precipitation 0.1 270 < th dose dependent rect. 3 2
523 252.97 radiation 1.0 30 < th dose dependent sin 11 NA
534 253.09 humidity 90.0 90 > th dose independent rect. 4 1
556 253.34 radiation 40.0 1440 > th dose independent sin 12 NA
571 253.50 radiation 1.0 10 < th dose independent rect. 21 15
587 253.75 radiation 1.0 10 < th dose independent rect. 21 11
603 253.90 temperature 25.0 90 < th dose independent rect. 4 1
610 253.95 precipitation 0.1 270 < th dose independent rect. 1 6
611 253.95 humidity 70.0 1440 > th dose independent rect. 18 18
612 253.95 precipitation 0.1 270 < th dose dependent rect. 1 6
614 253.96 temperature 30.0 30 < th dose dependent rect. 8 20
619 254.06 temperature 10.0 43200 > th dose independent rect. 9 6
623 254.09 radiation 40.0 1440 > th dose independent rect. 13 21
636 254.18 radiation 1.0 270 < th dose dependent rect. 5 21
657 254.38 humidity 70.0 1440 < th dose independent rect. 18 18
689 254.59 precipitation 0.1 90 < th dose independent rect. 21 7
691 254.59 precipitation 0.1 90 < th dose dependent rect. 21 7
692 254.60 atmosphere 1015.0 1440 < th dose independent rect. 3 6
704 254.67 radiation 1.0 270 < th dose independent rect. 5 21
706 254.69 precipitation 0.1 270 < th dose independent rect. 1 20
707 254.69 precipitation 0.1 270 < th dose dependent rect. 1 20
713 254.73 radiation 20.0 1440 > th dose independent sin 11 NA
714 254.73 wind 5.0 10 < th dose independent rect. 4 4
724 254.77 radiation 10.0 1440 > th dose independent rect. 15 20
729 254.80 wind 7.0 43200 > th dose dependent rect. 17 1
730 254.81 precipitation 0.1 10 < th dose independent rect. 4 4
731 254.81 precipitation 0.1 10 < th dose dependent rect. 4 4
737 254.87 wind 9.0 270 < th dose independent rect. 6 20
748 254.95 radiation 30.0 1440 > th dose dependent rect. 13 3
770 255.00 radiation 20.0 1440 > th dose independent rect. 13 21
775 255.09 radiation 1.0 1440 > th dose dependent rect. 18 12
778 255.11 atmosphere 1010.0 270 < th dose independent rect. 2 4
781 255.14 wind 9.0 43200 < th dose independent rect. 15 7
783 255.17 humidity 60.0 270 > th dose dependent rect. 21 4
785 255.19 wind 9.0 43200 > th dose independent rect. 15 8
791 255.21 radiation 1.0 720 > th dose independent rect. 18 12
805 255.29 humidity 60.0 14400 < th dose dependent rect. 16 17
811 255.33 temperature 10.0 270 > th dose independent rect. 2 4
813 255.33 temperature 30.0 270 < th dose independent rect. 2 4
814 255.33 humidity 50.0 270 > th dose independent rect. 2 4
817 255.33 atmosphere 995.0 270 > th dose independent rect. 2 4
819 255.33 radiation 20.0 270 < th dose independent rect. 2 4
822 255.33 temperature 10.0 270 > th dose independent rect. 6 20
837 255.37 atmosphere 1015.0 90 < th dose dependent rect. 4 3
839 255.39 radiation 20.0 4320 > th dose independent rect. 6 2
871 255.51 temperature 15.0 270 > th dose independent rect. 16 14
899 255.68 wind 3.0 10 < th dose independent rect. 5 1
908 255.74 atmosphere 1010.0 270 < th dose independent rect. 11 10
910 255.75 wind 1.0 43200 > th dose dependent rect. 3 2
914 255.77 atmosphere 1010.0 90 < th dose independent rect. 4 3
946 255.86 atmosphere 1015.0 10 < th dose dependent rect. 4 4
947 255.86 radiation 1.0 4320 > th dose dependent rect. 4 4
974 255.96 temperature 15.0 270 > th dose independent rect. 11 10
980 255.98 humidity 50.0 4320 < th dose dependent rect. 16 1