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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0458100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.01 (0.0901) R2 : 0.275
β1 : -5.31 (0.506) R2dD : 0.404 R2D : -0.105
β2 : 0.59 (0.22) R2dC : 0.0126 R2C : 0.00877
β3 : -1.48 (0.358) R2dE : 0.0325 R2E : 0.083
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 13 (1.58) R2dD*E : 0.29 R2D*E : -0.164
γ1 : -0.272 (0.2) R2dN8 : 0.00471 R2N8 : -0.0205
σ : 1.67
deviance : 1284.86
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_____
C
peak time of C : 2.5
E
wheather : radiation
threshold : 0.4243
memory length : 4316
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.9
open length of G : 7.82

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1281.83 1.68 4.01 -5.26 0.691 -1.47 -1.72 12.8 -0.302 2.6 0.4989 4325 22 7.87
1425.21 1.76 4.01 -2.82 0.911 -3.75 -1.41 -- -0.305 2.78 0.07112 4352 22.5 8.77
1284.86 1.67 4.01 -5.31 0.59 -1.48 -- 13 -0.272 2.5 0.4243 4316 21.9 7.82
1426.38 1.76 4.01 -2.85 0.841 -3.68 -- -- -0.0622 2.28 0.07144 4352 22.3 8.89
1302.18 1.68 4.01 -4.93 -- -1.66 -- 13.2 -0.241 -- 0.4131 4307 21.9 7.89
1615.15 1.88 3.83 -1.93 0.583 -- -1.42 -- 0.458 2.68 -- -- -- --
1622.21 1.89 3.83 -1.89 0.578 -- -- -- 0.467 2.61 -- -- -- --
1435.58 1.76 4.01 -2.97 -- -3.62 -- -- -0.0535 -- 0.05315 4283 0.517 8.95
1372.27 1.73 4 -- 0.0141 -4.06 -- -- 0.795 9.73 0.3754 4316 20.9 8.09
1641.76 1.89 3.82 -1.87 -- -- -- -- 0.481 -- -- -- -- --
1716.55 1.94 3.78 -- 0.541 -- -- -- 0.678 2.57 -- -- -- --
1365.57 1.72 4 -- -- -4.18 -- -- 0.902 -- 0.2955 4313 20.9 8.15
1733.74 1.94 3.78 -- -- -- -- -- 0.689 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1286.05 radiation 1 14400 < th dose dependent rect. 18 13
5 1291.78 radiation 1 14400 < th dose dependent rect. 24 6
6 1291.80 radiation 1 14400 < th dose dependent rect. 22 8
7 1291.81 radiation 1 14400 < th dose dependent rect. 4 2
27 1297.43 radiation 1 14400 < th dose dependent rect. 17 8
30 1297.47 radiation 1 14400 < th dose dependent rect. 17 3
45 1301.23 radiation 1 14400 < th dose dependent sin 12 NA
49 1301.51 radiation 1 14400 < th dose dependent rect. 17 21
95 1308.90 radiation 1 14400 < th dose dependent rect. 13 18
100 1309.68 humidity 90 43200 > th dose dependent rect. 8 1
112 1310.75 humidity 90 43200 > th dose independent rect. 8 3
120 1312.03 wind 1 43200 > th dose independent rect. 2 1
148 1314.57 radiation 1 43200 < th dose independent rect. 18 8
154 1314.95 radiation 1 43200 < th dose independent rect. 18 2
156 1315.00 humidity 80 43200 < th dose independent rect. 17 1
165 1315.31 radiation 1 43200 < th dose dependent rect. 7 22
174 1316.59 humidity 90 43200 < th dose independent rect. 8 3
182 1317.18 humidity 90 14400 > th dose independent rect. 22 6
183 1317.21 radiation 1 14400 < th dose independent rect. 17 14
184 1317.29 radiation 1 43200 < th dose dependent rect. 6 13
185 1317.30 radiation 1 43200 < th dose dependent rect. 6 17
245 1319.62 wind 1 43200 < th dose independent rect. 2 1
248 1319.89 wind 9 1440 > th dose dependent rect. 13 1
261 1320.50 radiation 1 14400 < th dose dependent rect. 24 19
264 1320.50 radiation 1 14400 < th dose dependent rect. 4 21
265 1320.51 radiation 1 14400 < th dose dependent rect. 4 15
289 1320.53 radiation 1 14400 < th dose dependent no NA NA
307 1320.60 radiation 1 14400 < th dose independent rect. 17 21
338 1322.10 radiation 1 43200 < th dose dependent sin 22 NA
340 1322.16 humidity 80 43200 < th dose independent rect. 12 1
347 1322.30 humidity 80 43200 > th dose independent rect. 17 2
351 1322.45 wind 9 1440 > th dose dependent rect. 12 4
369 1323.03 radiation 1 14400 > th dose independent rect. 17 2
381 1323.17 radiation 1 43200 < th dose independent rect. 7 18
385 1323.21 radiation 1 43200 < th dose independent rect. 7 12
386 1323.21 radiation 1 43200 < th dose independent rect. 7 14
396 1323.71 radiation 1 14400 > th dose independent rect. 17 15
400 1323.99 humidity 90 43200 < th dose independent rect. 5 7
402 1324.04 radiation 1 14400 > th dose independent rect. 17 22
405 1324.49 wind 9 1440 < th dose independent rect. 13 1
409 1324.71 temperature 20 43200 < th dose independent rect. 5 3
412 1324.77 temperature 20 43200 > th dose independent rect. 5 3
415 1325.22 temperature 20 43200 > th dose independent rect. 6 1
446 1325.65 temperature 20 43200 < th dose independent rect. 21 11
452 1325.69 temperature 20 43200 < th dose independent rect. 22 2
453 1325.76 radiation 1 43200 > th dose independent rect. 7 12
472 1326.01 temperature 20 43200 < th dose independent rect. 6 1
482 1326.18 temperature 20 43200 < th dose independent rect. 22 5
487 1326.32 temperature 20 43200 > th dose independent rect. 21 12
508 1326.41 humidity 90 43200 > th dose independent rect. 5 7
540 1326.60 radiation 1 14400 < th dose dependent rect. 4 10
541 1326.61 radiation 1 14400 < th dose dependent rect. 24 14
550 1326.63 temperature 20 43200 > th dose independent rect. 21 6
572 1326.69 temperature 20 43200 < th dose independent rect. 1 1
573 1326.70 temperature 20 43200 < th dose independent sin 9 NA
594 1327.06 radiation 1 14400 < th dose dependent rect. 13 12
597 1327.08 radiation 1 14400 < th dose dependent rect. 13 6
614 1327.17 temperature 20 43200 > th dose independent sin 9 NA
819 1328.42 temperature 20 43200 > th dose independent rect. 1 1
929 1329.29 humidity 90 43200 > th dose dependent rect. 7 7
958 1329.53 humidity 80 43200 > th dose independent rect. 12 1
963 1329.56 wind 9 1440 > th dose independent rect. 12 4