Os12g0457200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os12g0457200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.7 | 0.531 | 2.82 | -0.0121 | 0.0441 | 0.561 | -0.443 | 0.702 | 0.0805 | 14.1 | 19.79 | 650 | -- | -- |
| 128.89 | 0.529 | 2.8 | 0.101 | 0.0278 | 0.479 | -0.339 | -- | 0.106 | 14.1 | 19.72 | 769 | -- | -- |
| 128.42 | 0.528 | 2.82 | -0.0121 | 0.0434 | 0.551 | -- | 0.62 | 0.0809 | 14 | 19.71 | 649 | -- | -- |
| 129.31 | 0.53 | 2.8 | 0.089 | 0.0297 | 0.476 | -- | -- | 0.104 | 13.8 | 19.76 | 769 | -- | -- |
| 128.53 | 0.528 | 2.82 | -0.00983 | -- | 0.558 | -- | 0.613 | 0.0817 | -- | 19.71 | 670 | -- | -- |
| 134.15 | 0.543 | 2.82 | -0.0764 | 0.0784 | -- | -0.338 | -- | 0.0171 | 13.6 | -- | -- | -- | -- |
| 134.46 | 0.543 | 2.82 | -0.0882 | 0.0904 | -- | -- | -- | 0.0144 | 11.4 | -- | -- | -- | -- |
| 129.36 | 0.53 | 2.8 | 0.089 | -- | 0.477 | -- | -- | 0.106 | -- | 19.8 | 798 | -- | -- |
| 129.49 | 0.53 | 2.8 | -- | 0.0219 | 0.445 | -- | -- | 0.0959 | 13.9 | 19.8 | 798 | -- | -- |
| 134.97 | 0.543 | 2.82 | -0.0905 | -- | -- | -- | -- | 0.0135 | -- | -- | -- | -- | -- |
| 134.67 | 0.543 | 2.82 | -- | 0.0913 | -- | -- | -- | 0.0242 | 11.4 | -- | -- | -- | -- |
| 129.54 | 0.53 | 2.81 | -- | -- | 0.445 | -- | -- | 0.0915 | -- | 19.84 | 798 | -- | -- |
| 135.19 | 0.543 | 2.82 | -- | -- | -- | -- | -- | 0.0235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 119.88 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 119.94 | humidity | 80.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 6 | 120.61 | temperature | 20.0 | 10 | < th | dose independent | rect. | 8 | 7 |
| 8 | 120.86 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 6 | 2 |
| 14 | 121.33 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 9 |
| 18 | 121.43 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 6 | 9 |
| 24 | 121.50 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 2 |
| 31 | 121.62 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 6 | 6 |
| 135 | 122.50 | wind | 5.0 | 10 | > th | dose independent | rect. | 8 | 1 |
| 137 | 122.50 | wind | 5.0 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 195 | 123.45 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 201 | 123.56 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 203 | 123.61 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 23 | 7 |
| 224 | 123.87 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 226 | 123.88 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 22 | 10 |
| 246 | 124.12 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 270 | 124.43 | humidity | 80.0 | 720 | < th | dose independent | rect. | 21 | 11 |
| 289 | 124.64 | wind | 3.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 323 | 125.02 | humidity | 80.0 | 720 | > th | dose independent | rect. | 1 | 7 |
| 340 | 125.21 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 358 | 125.34 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 360 | 125.37 | humidity | 80.0 | 720 | > th | dose independent | rect. | 23 | 9 |
| 379 | 125.53 | wind | 5.0 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 400 | 125.65 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 13 | 9 |
| 401 | 125.65 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 408 | 125.71 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 411 | 125.72 | temperature | 20.0 | 720 | < th | dose independent | rect. | 6 | 17 |
| 413 | 125.73 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 24 | 2 |
| 417 | 125.76 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 419 | 125.76 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 420 | 125.76 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 421 | 125.77 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 423 | 125.78 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 20 | 3 |
| 431 | 125.80 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 10 | 12 |
| 437 | 125.84 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 4 |
| 447 | 125.87 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 4 |
| 454 | 125.91 | wind | 7.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 461 | 125.93 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 469 | 125.96 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 479 | 126.00 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 492 | 126.05 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 494 | 126.05 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 8 |
| 500 | 126.07 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 503 | 126.08 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 506 | 126.09 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 11 |
| 516 | 126.10 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 7 | 16 |
| 517 | 126.11 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 522 | 126.11 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 529 | 126.12 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 549 | 126.13 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 577 | 126.16 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 660 | 126.24 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 705 | 126.34 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 728 | 126.39 | temperature | 20.0 | 720 | < th | dose independent | sin | 21 | NA |
| 767 | 126.42 | humidity | 80.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 772 | 126.42 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 10 | 13 |
| 790 | 126.45 | humidity | 80.0 | 720 | < th | dose independent | sin | 9 | NA |
| 867 | 126.56 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 23 | 4 |
| 934 | 126.67 | temperature | 20.0 | 30 | > th | dose independent | sin | 1 | NA |
| 943 | 126.68 | temperature | 20.0 | 30 | < th | dose independent | sin | 1 | NA |
| 992 | 126.74 | temperature | 20.0 | 1440 | > th | dose independent | sin | 19 | NA |