Os12g0456100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os12g0456100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.16 | 0.548 | 5.82 | 1.73 | 2.32 | -0.327 | -0.574 | 2.36 | 0.745 | 20 | 21 | 1862 | -- | -- |
| 142.32 | 0.556 | 5.81 | 1.87 | 2.32 | -0.968 | -0.563 | -- | 0.806 | 20 | 16.4 | 24172 | -- | -- |
| 137.12 | 0.545 | 5.82 | 1.74 | 2.32 | -0.334 | -- | 2.32 | 0.747 | 20 | 21 | 1843 | -- | -- |
| 140.1 | 0.551 | 5.88 | 1.83 | 2.31 | -1.03 | -- | -- | 0.719 | 20 | 14.1 | 47520 | -- | -- |
| 426.56 | 0.962 | 5.76 | 1.55 | -- | -0.327 | -- | 2.36 | 0.727 | -- | 20.6 | 1585 | -- | -- |
| 155.28 | 0.584 | 5.94 | 0.934 | 2.31 | -- | -0.463 | -- | 0.474 | 20 | -- | -- | -- | -- |
| 155.91 | 0.585 | 5.94 | 0.947 | 2.31 | -- | -- | -- | 0.473 | 20 | -- | -- | -- | -- |
| 430.85 | 0.971 | 5.85 | 1.08 | -- | -0.604 | -- | -- | 0.558 | -- | 20.6 | 1585 | -- | -- |
| 168.89 | 0.605 | 6 | -- | 2.31 | 0.479 | -- | -- | 0.201 | 20 | 22.1 | 47520 | -- | -- |
| 447.76 | 0.989 | 5.88 | 0.924 | -- | -- | -- | -- | 0.444 | -- | -- | -- | -- | -- |
| 179.55 | 0.627 | 5.96 | -- | 2.31 | -- | -- | -- | 0.368 | 20 | -- | -- | -- | -- |
| 446.51 | 0.984 | 5.89 | -- | -- | 0.636 | -- | -- | 0.41 | -- | 35.2 | 47520 | -- | -- |
| 470.28 | 1.01 | 5.9 | -- | -- | -- | -- | -- | 0.341 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 131.18 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 23 | 8 |
| 8 | 133.62 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 23 | 8 |
| 10 | 134.03 | radiation | 1.0 | 270 | < th | dose dependent | sin | 11 | NA |
| 13 | 134.16 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 17 |
| 15 | 134.21 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 16 | 134.24 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 17 | 134.24 | wind | 9.0 | 270 | < th | dose dependent | rect. | 9 | 7 |
| 18 | 134.29 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 24 | 134.35 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 43 | 134.75 | temperature | 15.0 | 270 | > th | dose independent | rect. | 16 | 17 |
| 46 | 134.78 | radiation | 10.0 | 90 | < th | dose independent | rect. | 22 | 9 |
| 75 | 135.07 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 20 | 12 |
| 92 | 135.19 | wind | 9.0 | 270 | < th | dose dependent | rect. | 10 | 5 |
| 112 | 135.33 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 22 | 9 |
| 162 | 135.54 | radiation | 1.0 | 270 | < th | dose independent | sin | 11 | NA |
| 163 | 135.55 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 166 | 135.57 | temperature | 20.0 | 30 | > th | dose independent | rect. | 7 | 16 |
| 178 | 135.62 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 7 | 16 |
| 181 | 135.62 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 7 | 16 |
| 187 | 135.67 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 16 | NA |
| 193 | 135.70 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 7 |
| 202 | 135.72 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 23 | 9 |
| 207 | 135.75 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 208 | 135.75 | wind | 5.0 | 30 | < th | dose independent | rect. | 23 | 8 |
| 211 | 135.77 | wind | 9.0 | 10 | < th | dose independent | rect. | 23 | 8 |
| 212 | 135.77 | temperature | 10.0 | 10 | > th | dose independent | rect. | 23 | 8 |
| 213 | 135.77 | temperature | 30.0 | 10 | < th | dose independent | rect. | 23 | 8 |
| 214 | 135.77 | humidity | 50.0 | 10 | > th | dose independent | rect. | 23 | 8 |
| 218 | 135.77 | radiation | 20.0 | 10 | < th | dose independent | rect. | 23 | 8 |
| 221 | 135.77 | temperature | 10.0 | 10 | > th | dose independent | rect. | 7 | 16 |
| 223 | 135.77 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 7 | 16 |
| 235 | 135.79 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 16 |
| 241 | 135.82 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 23 | 8 |
| 277 | 135.91 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 24 | 8 |
| 280 | 135.91 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 284 | 135.91 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 24 | 8 |
| 289 | 135.91 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 24 | 8 |
| 290 | 135.91 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 16 |
| 337 | 136.07 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 338 | 136.07 | temperature | 30.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 376 | 136.18 | wind | 5.0 | 270 | < th | dose independent | rect. | 10 | 5 |
| 379 | 136.18 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 12 | 19 |
| 384 | 136.20 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 23 | 8 |
| 396 | 136.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 9 |
| 399 | 136.26 | radiation | 1.0 | 270 | > th | dose independent | sin | 11 | NA |
| 400 | 136.26 | radiation | 1.0 | 270 | > th | dose independent | rect. | 16 | 17 |
| 406 | 136.28 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 20 | 21 |
| 410 | 136.30 | wind | 9.0 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 421 | 136.32 | wind | 1.0 | 10 | > th | dose independent | rect. | 7 | 16 |
| 429 | 136.35 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 438 | 136.39 | radiation | 30.0 | 270 | < th | dose independent | rect. | 16 | 17 |
| 441 | 136.40 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 9 |
| 448 | 136.41 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 20 |
| 462 | 136.44 | wind | 9.0 | 270 | < th | dose dependent | rect. | 9 | 19 |
| 491 | 136.46 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 496 | 136.48 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 19 |
| 533 | 136.52 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 9 |
| 540 | 136.53 | wind | 5.0 | 270 | < th | dose independent | rect. | 9 | 19 |
| 594 | 136.62 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 597 | 136.63 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 598 | 136.63 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 599 | 136.63 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 22 | 9 |
| 611 | 136.67 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 642 | 136.74 | wind | 9.0 | 30 | < th | dose independent | rect. | 7 | 16 |
| 652 | 136.76 | radiation | 1.0 | 270 | < th | dose independent | rect. | 20 | 11 |
| 683 | 136.81 | radiation | 10.0 | 10 | > th | dose independent | sin | 10 | NA |
| 688 | 136.81 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 6 | 18 |
| 716 | 136.85 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 15 |
| 735 | 136.87 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 7 | 16 |
| 776 | 136.90 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 19 |
| 807 | 136.95 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 23 | 8 |
| 808 | 136.95 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 17 |
| 810 | 136.95 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 23 | 8 |
| 812 | 136.95 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 17 |
| 829 | 136.99 | wind | 1.0 | 90 | > th | dose independent | rect. | 23 | 8 |
| 917 | 137.10 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 934 | 137.11 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 17 |
| 964 | 137.14 | temperature | 10.0 | 1440 | > th | dose dependent | no | NA | NA |
| 995 | 137.18 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 996 | 137.18 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 4 |