Os12g0455100 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0455100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.42	(0.0455)	R²	:	0.56
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	1.32	(0.108)	R²_dC	:	0.145	R²_C	:	0.0318
β₃	:	2.63	(0.172)	R²_dE	:	0.24	R²_E	:	-0.0175
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-1.76	(0.0981)	R²_dN8	:	0.43	R²_N8	:	0.184
σ	:	0.848
deviance	:	331.28
__

_____

C
peak time of C	:	0.526
E
wheather	:	temperature
threshold	:	18.8
memory length	:	454
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
325.33	0.847	4.35	0.514	1.3	2.58	0.463	2.62	-1.62	0.466	18.03	459	--	--
332.35	0.849	4.4	0.255	1.37	2.55	0.701	--	-1.66	0.347	18.7	452	--	--
326.07	0.841	4.35	0.535	1.25	2.57	--	2.77	-1.61	0.408	18.02	487	--	--
331.33	0.848	4.41	0.0174	1.31	2.65	--	--	-1.75	0.556	18.8	454	--	--
376.91	0.904	4.34	0.42	--	2.84	--	2.69	-1.67	--	18.59	785	--	--
443.86	0.988	4.33	0.688	1.54	--	0.771	--	-1.3	22.1	--	--	--	--
446.19	0.989	4.33	0.658	1.54	--	--	--	-1.3	22.1	--	--	--	--
384.78	0.914	4.41	-0.16	--	2.92	--	--	-1.83	--	19.1	788	--	--
331.28	0.848	4.42	--	1.32	2.63	--	--	-1.76	0.526	18.8	454	--	--
589.15	1.13	4.29	0.678	--	--	--	--	-1.3	--	--	--	--	--
457.59	1	4.35	--	1.54	--	--	--	-1.37	22.1	--	--	--	--
385.37	0.914	4.41	--	--	2.86	--	--	-1.81	--	19.23	787	--	--
601.28	1.14	4.31	--	--	--	--	--	-1.37	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	319.92	temperature	20	720	> th	dose dependent	rect.	17	20
2	321.02	temperature	20	720	> th	dose dependent	rect.	17	18
13	324.17	temperature	10	270	> th	dose dependent	rect.	23	23
16	324.85	temperature	20	1440	> th	dose dependent	rect.	17	9
57	326.27	temperature	20	1440	> th	dose dependent	rect.	20	1
77	326.67	temperature	20	1440	> th	dose dependent	sin	13	NA
78	326.67	temperature	20	1440	> th	dose dependent	rect.	18	1
100	327.16	temperature	10	1440	> th	dose dependent	rect.	18	1
101	327.17	temperature	10	720	> th	dose dependent	rect.	8	23
127	327.75	temperature	15	270	> th	dose dependent	rect.	10	23
138	327.91	temperature	10	270	> th	dose dependent	rect.	21	23
170	328.35	temperature	30	1440	< th	dose dependent	rect.	18	1
175	328.42	temperature	30	1440	< th	dose dependent	rect.	17	5
200	328.69	temperature	20	720	> th	dose dependent	rect.	12	23
261	329.35	temperature	10	720	> th	dose dependent	rect.	6	23
297	329.68	temperature	10	1440	> th	dose dependent	rect.	20	1
379	330.26	temperature	15	720	> th	dose dependent	no	NA	NA
437	330.74	temperature	30	1440	< th	dose dependent	rect.	17	16
474	331.04	temperature	20	1440	> th	dose dependent	rect.	6	1
543	331.45	temperature	20	1440	> th	dose dependent	rect.	1	8
550	331.49	temperature	15	720	> th	dose dependent	rect.	3	23
580	331.68	temperature	30	720	< th	dose dependent	rect.	15	20
805	332.85	temperature	20	1440	> th	dose dependent	rect.	5	3
813	332.89	temperature	30	1440	< th	dose dependent	sin	13	NA