Os12g0448400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0448400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.59 | 0.389 | 9 | -1.73 | 0.872 | 2.75 | -0.269 | 1.32 | -0.545 | 23.2 | 9.956 | 30 | -- | -- |
| 69.49 | 0.388 | 9.02 | -1.91 | 0.828 | 2.76 | -0.501 | -- | -0.589 | 23.2 | 10.66 | 46 | -- | -- |
| 68.64 | 0.386 | 8.99 | -1.67 | 0.845 | 2.71 | -- | 1.61 | -0.524 | 23.2 | 7.813 | 47 | -- | -- |
| 70.67 | 0.392 | 9.02 | -1.9 | 0.842 | 2.75 | -- | -- | -0.588 | 23.2 | 10.54 | 47 | -- | -- |
| 72.72 | 0.397 | 8.99 | -1.88 | -- | 2.52 | -- | 0.37 | -0.57 | -- | 6.334 | 573 | -- | -- |
| 143.42 | 0.561 | 8.93 | -1.35 | 0.724 | -- | 0.198 | -- | -0.205 | 19.2 | -- | -- | -- | -- |
| 143.51 | 0.561 | 8.93 | -1.35 | 0.723 | -- | -- | -- | -0.205 | 19.3 | -- | -- | -- | -- |
| 72.82 | 0.397 | 9 | -1.95 | -- | 2.53 | -- | -- | -0.587 | -- | 8.125 | 574 | -- | -- |
| 156.43 | 0.583 | 8.95 | -- | 0.718 | 1.82 | -- | -- | -0.266 | 21.9 | 13.51 | 40 | -- | -- |
| 171.26 | 0.612 | 8.92 | -1.36 | -- | -- | -- | -- | -0.217 | -- | -- | -- | -- | -- |
| 191.6 | 0.648 | 8.9 | -- | 0.737 | -- | -- | -- | -0.0541 | 19.2 | -- | -- | -- | -- |
| 160.17 | 0.589 | 8.95 | -- | -- | 1.63 | -- | -- | -0.342 | -- | 21.2 | 548 | -- | -- |
| 220.31 | 0.693 | 8.88 | -- | -- | -- | -- | -- | -0.0656 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 4 | 65.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 17 | 67.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 23 | 68.08 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 42 | 68.59 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 51 | 68.70 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 66 | 69.27 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 78 | 69.58 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 89 | 69.85 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 92 | 69.89 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 108 | 70.16 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 113 | 70.19 | temperature | 15 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 124 | 70.46 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 132 | 70.62 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 151 | 70.94 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 152 | 70.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 157 | 71.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 168 | 71.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 169 | 71.18 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 178 | 71.39 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 213 | 71.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 266 | 72.53 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 339 | 73.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 369 | 73.64 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 435 | 74.22 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 19 |
| 451 | 74.36 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 470 | 74.61 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 488 | 74.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 506 | 74.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 593 | 75.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 599 | 75.80 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 685 | 76.58 | temperature | 15 | 1440 | > th | dose dependent | rect. | 9 | 15 |
| 690 | 76.66 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 701 | 76.75 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 702 | 76.75 | temperature | 15 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 800 | 77.24 | temperature | 15 | 1440 | > th | dose dependent | sin | 21 | NA |
| 881 | 77.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |