Os12g0447000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os12g0447000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.87 | 0.453 | 10.9 | -1.2 | 1.73 | -1.46 | 0.667 | 1.2 | -0.000991 | 16.5 | 21.3 | 2737 | -- | -- |
| 95.84 | 0.456 | 10.8 | -0.915 | 1.75 | -1.53 | 0.605 | -- | 0.0893 | 16.5 | 21.3 | 2734 | -- | -- |
| 94.06 | 0.452 | 10.9 | -1.21 | 1.74 | -1.46 | -- | 1.24 | -0.00185 | 16.5 | 21.31 | 2730 | -- | -- |
| 97.1 | 0.459 | 10.8 | -0.91 | 1.74 | -1.58 | -- | -- | 0.0709 | 16.5 | 21.37 | 2737 | -- | -- |
| 239.18 | 0.72 | 10.8 | -0.695 | -- | -1.35 | -- | 0.862 | 0.274 | -- | 20.6 | 350 | -- | -- |
| 159.61 | 0.592 | 10.7 | -0.0883 | 1.66 | -- | 0.9 | -- | 0.548 | 16.7 | -- | -- | -- | -- |
| 161.75 | 0.596 | 10.7 | -0.0832 | 1.66 | -- | -- | -- | 0.553 | 16.6 | -- | -- | -- | -- |
| 155.08 | 0.58 | 10.9 | -0.306 | -- | -1.57 | -- | -- | 0.198 | -- | 26.4 | 324 | -- | -- |
| 110.25 | 0.489 | 10.8 | -- | 1.71 | -1.12 | -- | -- | 0.208 | 16.4 | 22.34 | 2344 | -- | -- |
| 308.97 | 0.821 | 10.7 | -0.147 | -- | -- | -- | -- | 0.509 | -- | -- | -- | -- | -- |
| 161.94 | 0.595 | 10.7 | -- | 1.67 | -- | -- | -- | 0.562 | 16.6 | -- | -- | -- | -- |
| 157.27 | 0.584 | 10.8 | -- | -- | -1.41 | -- | -- | 0.255 | -- | 26.5 | 316 | -- | -- |
| 309.54 | 0.821 | 10.7 | -- | -- | -- | -- | -- | 0.525 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.91 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 7 |
| 15 | 93.35 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 23 | 93.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 25 | 93.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 41 | 93.80 | temperature | 25 | 4320 | < th | dose dependent | sin | 16 | NA |
| 93 | 94.53 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 12 |
| 101 | 94.57 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 102 | 94.58 | temperature | 10 | 4320 | > th | dose dependent | rect. | 19 | 5 |
| 123 | 94.66 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 143 | 94.74 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 162 | 94.82 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 13 |
| 203 | 94.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 204 | 94.97 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 330 | 95.48 | temperature | 15 | 4320 | > th | dose dependent | sin | 15 | NA |
| 344 | 95.53 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 503 | 95.94 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 560 | 96.05 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 637 | 96.19 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 658 | 96.22 | temperature | 25 | 4320 | < th | dose dependent | rect. | 19 | 23 |
| 675 | 96.24 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 23 |
| 696 | 96.28 | temperature | 15 | 4320 | > th | dose dependent | rect. | 16 | 20 |
| 921 | 96.56 | temperature | 15 | 4320 | > th | dose dependent | no | NA | NA |
| 990 | 96.64 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 23 |