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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0446900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Thymidylate synthase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.87 (0.0315) R2 : 0.455
β1 : -1.65 (0.115) R2dD : 0.254 R2D : 0.292
β2 : 0.769 (0.0819) R2dC : 0.106 R2C : 0.0938
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.425 (0.0672) R2dN8 : 0.0642 R2N8 : 0.0884
σ : 0.592
deviance : 159.78
__
_____
C
peak time of C : 17.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
150.8 0.577 4.84 -1.4 0.792 -0.278 -0.107 0.962 0.522 16.9 20 31 -- --
155.19 0.58 4.85 -1.5 0.793 -0.35 0.133 -- 0.518 16.7 19.8 42 -- --
150.82 0.572 4.84 -1.4 0.791 -0.28 -- 0.941 0.521 16.9 20 31 -- --
155.08 0.58 4.86 -1.55 0.813 -0.358 -- -- 0.484 16.9 19.8 42 -- --
182.8 0.63 4.83 -1.43 -- -0.127 -- 1.13 0.483 -- 20 30 -- --
159.7 0.592 4.87 -1.65 0.768 -- 0.186 -- 0.424 17.2 -- -- -- --
159.78 0.592 4.87 -1.65 0.769 -- -- -- 0.425 17.2 -- -- -- --
187.42 0.64 4.86 -1.59 -- -0.374 -- -- 0.444 -- 18.7 43 -- --
212.25 0.679 4.83 -- 0.753 -0.824 -- -- 0.701 16.5 18.63 67 -- --
190.73 0.645 4.86 -1.68 -- -- -- -- 0.406 -- -- -- -- --
231.45 0.712 4.83 -- 0.798 -- -- -- 0.609 17.1 -- -- -- --
240.46 0.722 4.81 -- -- -1.35 -- -- 0.667 -- 18.5 335 -- --
264.83 0.76 4.82 -- -- -- -- -- 0.592 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 142.66 temperature 20.0 30 > th dose independent rect. 7 23
3 145.42 temperature 10.0 30 > th dose dependent rect. 7 23
5 146.83 atmosphere 1015.0 30 < th dose independent rect. 7 23
6 146.89 humidity 80.0 30 > th dose dependent rect. 6 1
7 146.93 precipitation 0.1 30 < th dose independent rect. 7 23
8 146.93 precipitation 0.1 30 < th dose dependent rect. 7 23
9 146.99 atmosphere 1005.0 30 > th dose dependent rect. 6 1
10 147.02 wind 9.0 30 < th dose independent rect. 7 23
11 147.04 atmosphere 1000.0 30 > th dose independent rect. 7 23
12 147.11 radiation 1.0 30 > th dose dependent rect. 6 1
13 147.14 temperature 30.0 30 < th dose dependent rect. 6 1
14 147.25 wind 3.0 30 < th dose dependent rect. 6 1
16 147.31 wind 9.0 4320 < th dose independent rect. 7 1
18 147.33 humidity 80.0 43200 < th dose independent rect. 23 18
20 147.36 humidity 80.0 43200 > th dose independent rect. 24 17
27 147.47 wind 3.0 30 < th dose independent rect. 6 1
31 147.50 humidity 80.0 43200 < th dose independent rect. 24 16
40 147.64 humidity 80.0 43200 > th dose independent rect. 1 14
44 147.65 wind 1.0 30 > th dose independent rect. 6 1
45 147.66 humidity 70.0 43200 > th dose dependent rect. 18 20
49 147.69 temperature 10.0 1440 > th dose independent rect. 7 1
53 147.69 temperature 30.0 1440 < th dose independent rect. 7 1
57 147.69 humidity 50.0 1440 > th dose independent rect. 7 1
62 147.69 atmosphere 995.0 1440 > th dose independent rect. 7 1
63 147.69 atmosphere 1015.0 1440 < th dose independent rect. 7 1
64 147.69 temperature 10.0 1440 > th dose independent rect. 8 23
74 147.76 humidity 80.0 30 > th dose independent rect. 6 1
75 147.76 humidity 70.0 43200 > th dose dependent sin 15 NA
77 147.77 humidity 70.0 43200 > th dose dependent rect. 13 20
81 147.79 humidity 80.0 43200 > th dose independent sin 4 NA
90 147.81 radiation 1.0 30 > th dose independent rect. 6 1
92 147.81 humidity 70.0 43200 > th dose dependent rect. 15 12
98 147.83 humidity 70.0 43200 > th dose dependent rect. 16 10
102 147.84 temperature 10.0 30 > th dose independent rect. 6 1
104 147.84 temperature 30.0 30 < th dose independent rect. 6 1
105 147.84 humidity 50.0 30 > th dose independent rect. 6 1
108 147.84 atmosphere 995.0 30 > th dose independent rect. 6 1
110 147.84 atmosphere 1015.0 30 < th dose independent rect. 6 1
111 147.84 radiation 20.0 30 < th dose independent rect. 6 1
114 147.84 precipitation 0.1 30 < th dose independent rect. 6 1
115 147.84 temperature 10.0 30 > th dose independent rect. 7 23
116 147.84 precipitation 0.1 30 < th dose dependent rect. 6 1
122 147.87 wind 9.0 43200 < th dose independent rect. 17 3
124 147.88 temperature 25.0 10 > th dose independent rect. 6 1
137 147.91 wind 7.0 43200 > th dose dependent rect. 18 2
149 147.94 humidity 80.0 43200 < th dose independent rect. 22 22
157 147.97 humidity 90.0 30 < th dose independent rect. 6 1
160 147.98 temperature 20.0 30 > th dose independent rect. 9 21
162 147.98 radiation 20.0 10 < th dose dependent rect. 6 1
184 148.07 temperature 20.0 30 > th dose independent rect. 7 16
187 148.08 humidity 70.0 43200 > th dose dependent sin 6 NA
194 148.09 atmosphere 1000.0 720 > th dose dependent rect. 19 12
212 148.13 temperature 10.0 30 > th dose dependent rect. 6 1
221 148.16 humidity 80.0 43200 < th dose independent sin 4 NA
279 148.31 radiation 1.0 4320 < th dose independent rect. 8 7
280 148.31 radiation 1.0 4320 < th dose dependent rect. 8 7
285 148.34 wind 9.0 43200 > th dose independent rect. 16 4
302 148.41 radiation 1.0 4320 > th dose independent rect. 13 2
312 148.46 radiation 1.0 4320 < th dose independent rect. 9 4
316 148.46 radiation 1.0 4320 < th dose dependent rect. 9 4
321 148.48 humidity 80.0 43200 > th dose independent rect. 3 10
324 148.48 humidity 70.0 43200 > th dose dependent no NA NA
325 148.49 radiation 1.0 4320 > th dose independent rect. 9 6
348 148.57 humidity 70.0 43200 > th dose dependent rect. 7 23
359 148.60 radiation 1.0 4320 < th dose independent rect. 13 2
363 148.60 radiation 1.0 4320 < th dose dependent rect. 13 2
369 148.63 humidity 80.0 43200 < th dose independent rect. 8 21
372 148.64 humidity 80.0 43200 > th dose independent rect. 8 22
374 148.64 atmosphere 1010.0 720 < th dose dependent rect. 20 12
379 148.66 radiation 1.0 4320 < th dose independent rect. 9 2
382 148.66 radiation 1.0 4320 < th dose dependent rect. 9 2
409 148.72 humidity 80.0 43200 > th dose independent rect. 3 23
430 148.76 humidity 80.0 43200 < th dose independent rect. 11 17
440 148.79 humidity 70.0 43200 > th dose dependent rect. 23 23
465 148.84 radiation 40.0 4320 < th dose independent rect. 7 1
470 148.85 temperature 20.0 30 > th dose independent rect. 7 18
493 148.88 humidity 80.0 43200 > th dose independent no NA NA
494 148.88 wind 5.0 43200 < th dose independent rect. 13 1
501 148.89 humidity 80.0 43200 < th dose independent rect. 3 23
508 148.90 atmosphere 1010.0 1440 > th dose independent rect. 7 3
513 148.90 wind 7.0 43200 > th dose dependent rect. 16 4
517 148.91 wind 5.0 43200 > th dose independent rect. 13 1
518 148.91 temperature 20.0 30 > th dose independent rect. 15 22
534 148.94 atmosphere 1010.0 1440 > th dose independent rect. 9 1
551 148.97 humidity 80.0 43200 < th dose independent no NA NA
638 149.13 atmosphere 1000.0 30 > th dose dependent rect. 23 8
641 149.15 radiation 40.0 4320 < th dose independent rect. 24 8
677 149.22 humidity 70.0 43200 > th dose dependent rect. 21 3
684 149.23 atmosphere 1010.0 720 < th dose dependent sin 10 NA
686 149.23 atmosphere 1010.0 720 < th dose dependent rect. 23 4
691 149.24 atmosphere 1015.0 30 < th dose dependent rect. 6 1
703 149.26 temperature 20.0 270 > th dose independent rect. 7 20
704 149.26 humidity 80.0 43200 > th dose independent rect. 16 23
728 149.31 radiation 1.0 4320 > th dose independent rect. 9 1
743 149.33 temperature 20.0 4320 > th dose independent rect. 13 4
773 149.38 radiation 40.0 4320 < th dose independent rect. 3 5
775 149.38 humidity 50.0 43200 < th dose dependent rect. 20 9
778 149.39 atmosphere 1010.0 1440 < th dose independent rect. 9 1
793 149.41 temperature 20.0 4320 < th dose independent rect. 13 4
815 149.43 humidity 50.0 43200 < th dose dependent rect. 21 7
823 149.44 humidity 90.0 10 < th dose dependent rect. 6 1
830 149.45 wind 9.0 14400 > th dose independent rect. 14 1
835 149.46 wind 9.0 43200 > th dose independent rect. 16 17
837 149.46 humidity 50.0 43200 > th dose dependent rect. 22 1
853 149.49 wind 1.0 1440 < th dose independent rect. 3 3
856 149.49 wind 7.0 43200 > th dose dependent rect. 16 1
890 149.53 atmosphere 1000.0 30 > th dose dependent rect. 23 10
903 149.55 humidity 70.0 14400 > th dose independent rect. 20 10
905 149.55 humidity 80.0 43200 < th dose independent rect. 14 23
906 149.55 wind 7.0 4320 > th dose dependent rect. 8 1
933 149.59 temperature 20.0 30 < th dose independent rect. 5 22
936 149.60 wind 7.0 43200 < th dose independent rect. 16 16
943 149.60 wind 7.0 43200 > th dose dependent rect. 16 17
967 149.62 temperature 10.0 30 > th dose dependent rect. 7 16
984 149.64 wind 1.0 1440 > th dose independent rect. 4 2
987 149.64 humidity 50.0 43200 < th dose independent rect. 20 10
988 149.64 radiation 40.0 4320 < th dose independent rect. 18 14