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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0445300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, hold transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.01 (0.0478) R2 : 0.677
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.16 (0.185) R2dC : 0.0618 R2C : 0.283
β3 : 2.8 (0.181) R2dE : 0.377 R2E : 0.608
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.292 (0.102) R2dN8 : 0.00961 R2N8 : 0.0145
σ : 0.898
deviance : 371.55
__
_____
C
peak time of C : 6.76
E
wheather : temperature
threshold : 24.93
memory length : 272
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 0.0386
open length of G : 6.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
356.69 0.887 4.01 0.189 1.18 2.72 0.172 2.15 -0.316 6.83 25 272 0 7
364.71 0.889 4.01 0.1 1.16 2.77 0.942 -- -0.331 6.84 24.9 272 0.0167 6.93
356.52 0.879 4.01 0.189 1.18 2.72 -- 2.26 -0.316 6.83 25 272 0.0191 7
371.26 0.897 4.01 0.118 1.18 2.79 -- -- -0.314 6.78 24.94 272 0.0343 6.85
388.76 0.918 4.02 0.112 -- 3.58 -- 2.27 -0.301 -- 24.9 273 0.16 6.77
526.5 1.08 4.03 0.137 3.35 -- 2.51 -- -0.549 6.05 -- -- -- --
542 1.09 4.03 0.161 3.36 -- -- -- -0.558 6.07 -- -- -- --
399.68 0.931 4.06 0.0349 -- 3.64 -- -- -0.309 -- 24.99 281 0.143 6.75
371.55 0.898 4.01 -- 1.16 2.8 -- -- -0.292 6.76 24.93 272 0.0386 6.8
1127.82 1.57 4.09 0.258 -- -- -- -- -0.482 -- -- -- -- --
542.69 1.09 4.03 -- 3.36 -- -- -- -0.576 6.06 -- -- -- --
399.6 0.931 4.06 -- -- 3.7 -- -- -0.3 -- 25 281 0.125 6.75
1129.57 1.57 4.09 -- -- -- -- -- -0.511 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 356.88 temperature 25.0 270 < th dose independent rect. 24 7
8 377.93 atmosphere 1015.0 270 < th dose dependent rect. 24 7
9 378.20 precipitation 0.1 270 < th dose independent rect. 24 8
10 378.20 precipitation 0.1 270 < th dose dependent rect. 24 8
14 381.80 wind 7.0 10 < th dose dependent rect. 3 6
20 383.48 radiation 20.0 270 < th dose independent rect. 24 8
21 383.83 precipitation 0.1 270 < th dose independent rect. 1 18
22 383.83 precipitation 0.1 270 < th dose dependent rect. 1 18
23 384.32 humidity 50.0 90 > th dose dependent rect. 21 6
25 384.55 radiation 40.0 270 < th dose dependent rect. 24 8
29 386.22 wind 7.0 270 < th dose independent rect. 24 8
33 386.66 wind 5.0 30 < th dose dependent rect. 3 8
35 387.23 humidity 70.0 270 > th dose independent rect. 24 8
41 387.37 temperature 15.0 270 > th dose independent rect. 24 7
42 387.37 atmosphere 1015.0 270 < th dose independent rect. 24 7
45 387.38 humidity 50.0 270 > th dose independent rect. 24 7
47 387.38 atmosphere 995.0 270 > th dose independent rect. 24 7
50 387.38 temperature 10.0 270 > th dose independent rect. 7 17
63 388.05 temperature 15.0 90 > th dose independent rect. 3 18
68 388.46 precipitation 0.1 90 < th dose independent rect. 3 18
69 388.46 precipitation 0.1 90 < th dose dependent rect. 3 18
71 388.70 temperature 15.0 270 > th dose independent rect. 1 18
72 388.84 wind 9.0 270 < th dose independent rect. 7 17
78 389.58 precipitation 0.1 10 < th dose independent rect. 3 18
79 389.58 precipitation 0.1 10 < th dose dependent rect. 3 18
88 390.06 wind 9.0 90 < th dose independent rect. 3 18
91 390.31 wind 9.0 270 < th dose independent rect. 1 18
93 390.45 temperature 10.0 90 > th dose independent rect. 21 6
94 390.45 temperature 30.0 90 < th dose independent rect. 21 6
95 390.45 humidity 50.0 90 > th dose independent rect. 21 6
98 390.45 atmosphere 995.0 90 > th dose independent rect. 21 6
99 390.45 radiation 1.0 90 < th dose independent rect. 21 6
105 390.45 atmosphere 1015.0 90 < th dose independent rect. 3 18
106 390.45 radiation 1.0 90 < th dose dependent rect. 21 6
111 390.60 wind 9.0 90 < th dose independent rect. 21 6
112 390.80 humidity 50.0 90 > th dose dependent rect. 19 8
114 390.95 humidity 50.0 270 > th dose dependent rect. 19 6
116 391.00 temperature 10.0 270 > th dose independent rect. 19 6
117 391.00 temperature 30.0 270 < th dose independent rect. 19 6
118 391.00 humidity 50.0 270 > th dose independent rect. 19 6
119 391.00 atmosphere 995.0 270 > th dose independent rect. 19 6
120 391.00 radiation 1.0 270 < th dose independent rect. 19 6
126 391.00 atmosphere 1015.0 270 < th dose independent rect. 1 18
127 391.00 radiation 1.0 270 < th dose dependent rect. 19 6
134 391.12 wind 9.0 90 < th dose dependent rect. 21 6
135 391.22 wind 9.0 270 < th dose independent rect. 19 6
143 391.60 precipitation 0.1 90 < th dose independent rect. 21 6
144 391.60 precipitation 0.1 90 < th dose dependent rect. 21 6
149 392.01 wind 9.0 270 < th dose dependent rect. 24 7
151 392.24 temperature 25.0 90 < th dose independent rect. 3 6
152 392.31 atmosphere 1010.0 270 < th dose independent rect. 12 8
156 392.56 temperature 15.0 270 > th dose independent rect. 12 8
157 392.63 precipitation 0.1 270 < th dose independent rect. 7 17
158 392.63 precipitation 0.1 270 < th dose dependent rect. 7 17
160 392.69 radiation 1.0 270 < th dose dependent rect. 7 18
161 392.69 radiation 1.0 270 < th dose dependent rect. 5 20
163 392.91 wind 9.0 270 < th dose independent rect. 12 8
166 392.93 temperature 10.0 270 > th dose independent rect. 20 16
167 392.93 atmosphere 995.0 270 > th dose independent rect. 20 16
170 393.07 precipitation 0.1 270 < th dose independent rect. 19 6
171 393.07 precipitation 0.1 270 < th dose dependent rect. 19 6
178 393.61 wind 9.0 270 < th dose independent rect. 20 16
179 393.67 precipitation 0.1 30 < th dose independent rect. 3 6
180 393.67 precipitation 0.1 30 < th dose dependent rect. 3 6
182 393.76 precipitation 0.1 270 < th dose independent rect. 12 8
183 393.76 precipitation 0.1 270 < th dose dependent rect. 12 8
202 394.70 humidity 50.0 270 > th dose dependent rect. 24 7
206 394.91 atmosphere 1015.0 90 < th dose dependent rect. 3 6
233 395.43 wind 5.0 30 < th dose independent rect. 3 6
237 395.58 wind 1.0 270 > th dose independent rect. 12 8
242 395.80 wind 9.0 90 < th dose dependent rect. 19 8
258 395.97 wind 9.0 270 < th dose dependent rect. 19 6
259 395.98 radiation 40.0 30 < th dose independent rect. 3 8
329 396.90 wind 9.0 270 < th dose dependent rect. 1 5
349 397.27 radiation 40.0 90 < th dose dependent rect. 3 6
351 397.30 humidity 50.0 30 > th dose dependent rect. 3 8
356 397.44 humidity 50.0 90 > th dose dependent rect. 3 6
358 397.49 temperature 30.0 270 < th dose dependent rect. 24 6
390 397.95 precipitation 0.1 270 < th dose independent rect. 13 17
392 397.95 precipitation 0.1 270 < th dose dependent rect. 13 17
457 398.73 humidity 50.0 270 > th dose independent rect. 20 15
458 398.78 radiation 40.0 30 < th dose dependent rect. 3 8
462 398.87 radiation 1.0 270 < th dose independent rect. 7 18
472 399.11 radiation 30.0 90 < th dose independent rect. 3 6
475 399.12 radiation 40.0 30 < th dose independent rect. 3 18
514 399.84 atmosphere 995.0 270 > th dose independent rect. 7 17
526 400.03 precipitation 0.1 270 < th dose independent rect. 3 1
527 400.03 precipitation 0.1 270 < th dose dependent rect. 3 1
529 400.19 humidity 60.0 90 > th dose independent rect. 3 6
531 400.22 temperature 30.0 270 < th dose dependent rect. 1 4
542 400.44 temperature 10.0 90 > th dose independent rect. 3 6
545 400.44 atmosphere 995.0 90 > th dose independent rect. 3 6
546 400.44 atmosphere 1015.0 90 < th dose independent rect. 3 6
547 400.44 temperature 10.0 90 > th dose independent rect. 9 18
625 401.62 wind 9.0 270 < th dose independent rect. 13 17
637 401.78 temperature 15.0 270 > th dose independent rect. 13 17
643 401.84 wind 9.0 90 < th dose independent rect. 9 18
648 401.92 temperature 10.0 270 > th dose independent rect. 6 7
649 401.92 atmosphere 995.0 270 > th dose independent rect. 6 7
650 401.92 atmosphere 1015.0 270 < th dose independent rect. 6 7
654 401.96 atmosphere 995.0 270 > th dose independent rect. 1 18
670 402.52 precipitation 0.1 270 < th dose independent rect. 6 7
671 402.52 precipitation 0.1 270 < th dose dependent rect. 6 7
680 402.68 wind 9.0 270 < th dose independent rect. 6 7
723 403.36 atmosphere 995.0 90 > th dose dependent rect. 21 6
739 403.55 atmosphere 1015.0 270 < th dose dependent rect. 3 1
740 403.56 precipitation 0.1 30 < th dose independent rect. 9 18
741 403.56 precipitation 0.1 30 < th dose dependent rect. 9 18
745 403.67 atmosphere 995.0 90 > th dose independent rect. 3 18
750 403.74 precipitation 0.1 270 < th dose independent rect. 20 16
751 403.74 precipitation 0.1 270 < th dose dependent rect. 20 16
753 403.80 wind 3.0 270 < th dose independent rect. 3 1
757 403.82 wind 9.0 270 < th dose dependent rect. 7 17
773 404.09 wind 5.0 270 < th dose dependent rect. 3 1
839 404.94 temperature 30.0 90 < th dose dependent rect. 3 6
920 405.93 atmosphere 995.0 270 > th dose independent rect. 12 8
964 406.68 radiation 40.0 270 < th dose independent rect. 14 16
982 406.92 wind 3.0 30 < th dose independent rect. 3 8
984 407.00 atmosphere 995.0 30 > th dose independent rect. 9 18