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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0445200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Winged helix repressor DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0255) R2 : 0.00273
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.06 (0.0537) R2dN8 : 0.00352 R2N8 : 0.00273
σ : 0.481
deviance : 106.06
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
97.83 0.465 2.96 1.32 0.127 3.04 -0.429 -18 0.0961 4.88 999.8 347 -- --
102.23 0.475 3.15 0.256 0.11 -0.125 -0.506 -- 0.0943 4.7 999.8 347 -- --
98.22 0.462 2.96 1.32 0.132 3.04 -- -17.9 0.0927 5.95 999.7 346 -- --
99.96 0.466 3.16 0.226 0.143 -0.438 -- -- 0.0783 4.67 999 2650 -- --
99.12 0.464 2.96 1.32 -- 3.02 -- -17.9 0.101 -- 999.7 346 -- --
102.65 0.475 3.15 0.278 0.107 -- -0.515 -- 0.0863 4.67 -- -- -- --
103.14 0.476 3.15 0.282 0.122 -- -- -- 0.0891 6.57 -- -- -- --
100.42 0.467 3.15 0.239 -- -0.476 -- -- 0.118 -- 999 2650 -- --
100.87 0.468 3.15 -- 0.13 -0.52 -- -- 0.0976 6.37 999 2650 -- --
103.92 0.476 3.15 0.285 -- -- -- -- 0.0916 -- -- -- -- --
105.23 0.48 3.16 -- 0.126 -- -- -- 0.0577 6.44 -- -- -- --
101.74 0.47 3.15 -- -- -0.535 -- -- 0.0994 -- 998.9 2650 -- --
106.06 0.481 3.16 -- -- -- -- -- 0.06 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.00 atmosphere 1000.0 270 < th dose independent rect. 6 2
3 85.40 atmosphere 1000.0 90 < th dose independent rect. 8 1
4 85.40 atmosphere 1000.0 10 < th dose independent rect. 9 1
61 86.56 atmosphere 1000.0 90 < th dose dependent rect. 9 1
98 87.08 atmosphere 1000.0 270 < th dose dependent rect. 6 2
100 87.18 atmosphere 1000.0 270 < th dose dependent rect. 5 4
136 88.49 atmosphere 1000.0 720 < th dose dependent rect. 22 4
163 89.32 atmosphere 1000.0 720 < th dose independent rect. 23 3
174 89.59 radiation 40.0 90 > th dose dependent rect. 9 1
235 90.55 atmosphere 1000.0 720 < th dose independent rect. 1 1
291 92.23 atmosphere 1010.0 30 < th dose dependent rect. 10 1
301 92.42 atmosphere 1000.0 270 > th dose independent sin 7 NA
325 92.52 atmosphere 1000.0 270 < th dose independent sin 7 NA
439 93.82 radiation 40.0 90 > th dose dependent sin 12 NA
442 93.85 atmosphere 1000.0 720 < th dose dependent sin 10 NA
467 94.07 atmosphere 1000.0 270 < th dose independent rect. 16 18
486 94.33 wind 3.0 10 < th dose dependent rect. 10 1
559 94.66 atmosphere 1000.0 270 > th dose independent sin 4 NA
561 94.66 atmosphere 1000.0 1440 < th dose dependent rect. 10 1
569 94.73 temperature 10.0 30 > th dose dependent rect. 11 23
595 94.81 atmosphere 1000.0 10 > th dose independent sin 5 NA
620 94.89 atmosphere 1000.0 10 < th dose independent sin 5 NA
637 94.95 radiation 1.0 90 > th dose dependent rect. 9 2
643 94.98 wind 3.0 10 < th dose independent rect. 9 2
644 94.98 wind 7.0 1440 > th dose independent rect. 20 5
657 95.01 wind 7.0 1440 < th dose independent rect. 20 6
667 95.03 wind 7.0 1440 < th dose independent rect. 20 11
679 95.07 atmosphere 1000.0 720 < th dose dependent rect. 3 1
710 95.15 radiation 20.0 10 > th dose independent rect. 10 1
715 95.16 radiation 1.0 30 > th dose independent rect. 11 23
728 95.22 wind 3.0 10 < th dose independent rect. 9 12
736 95.25 radiation 1.0 10 > th dose dependent rect. 10 1
740 95.26 wind 7.0 1440 > th dose dependent rect. 20 5
756 95.29 temperature 25.0 10 > th dose independent rect. 10 1
781 95.34 temperature 30.0 10 < th dose independent rect. 10 1
782 95.34 atmosphere 1010.0 10 < th dose independent rect. 10 1
801 95.40 humidity 80.0 10 < th dose independent rect. 10 1
808 95.41 temperature 10.0 1440 > th dose independent rect. 11 1
812 95.41 humidity 60.0 10 > th dose independent rect. 10 1
813 95.41 atmosphere 995.0 1440 > th dose independent rect. 11 1
816 95.41 precipitation 0.1 1440 < th dose independent rect. 11 1
819 95.41 temperature 10.0 1440 > th dose independent rect. 12 23
823 95.41 precipitation 0.1 1440 < th dose dependent rect. 11 1
825 95.42 radiation 20.0 90 > th dose independent rect. 9 2
832 95.44 wind 1.0 10 > th dose independent rect. 10 1
833 95.44 temperature 10.0 10 > th dose independent rect. 10 1
837 95.44 atmosphere 995.0 10 > th dose independent rect. 10 1
840 95.44 precipitation 0.1 10 < th dose independent rect. 10 1
842 95.44 wind 9.0 10 < th dose independent rect. 11 23
843 95.44 temperature 10.0 10 > th dose independent rect. 11 23
844 95.44 precipitation 0.1 10 < th dose dependent rect. 10 1
849 95.46 radiation 30.0 10 < th dose independent rect. 10 1
859 95.49 temperature 25.0 30 > th dose dependent rect. 10 1
862 95.50 temperature 10.0 10 > th dose dependent rect. 10 1
863 95.50 atmosphere 1005.0 30 > th dose dependent rect. 10 1
868 95.52 precipitation 0.1 1440 > th dose independent rect. 20 2
871 95.52 humidity 50.0 10 > th dose dependent rect. 10 1
872 95.52 humidity 90.0 10 < th dose dependent rect. 10 1
873 95.52 precipitation 0.1 1440 > th dose dependent rect. 20 2
882 95.54 atmosphere 995.0 30 > th dose independent rect. 11 23
883 95.54 precipitation 0.1 30 < th dose independent rect. 11 23
891 95.54 precipitation 0.1 30 < th dose dependent rect. 11 23
893 95.55 atmosphere 1005.0 30 > th dose independent rect. 10 1
941 95.63 atmosphere 1000.0 1440 < th dose dependent rect. 5 7
943 95.63 wind 9.0 10 < th dose dependent rect. 9 11
945 95.64 wind 7.0 1440 > th dose independent rect. 20 2
955 95.66 atmosphere 1000.0 10 < th dose independent rect. 22 13
958 95.67 atmosphere 1000.0 10 < th dose independent rect. 18 17
965 95.68 atmosphere 1000.0 720 > th dose independent rect. 19 16
969 95.68 wind 7.0 1440 > th dose dependent rect. 20 2
977 95.70 radiation 40.0 30 < th dose dependent rect. 10 1