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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0440400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.36 (0.0555) R2 : 0.148
β1 : -1.04 (0.204) R2dD : 0.0509 R2D : 0.0165
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.6 (0.218) R2dE : 0.11 R2E : 0.0962
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.215 (0.121) R2dN8 : 0.00837 R2N8 : 0.0136
σ : 1.03
deviance : 490.83
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 23.37
memory length : 1846
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.2
open length of G : 1.36

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
490.12 1.04 3.35 -0.914 0.0444 1.44 0.874 1.03 -0.201 19 23.38 1976 7.13 1.11
489.48 1.03 3.35 -0.949 0.0609 1.5 0.817 -- -0.21 18.8 23.39 1904 7.23 1.27
488.95 1.03 3.34 -0.984 0.0787 1.54 -- 1.2 -0.204 18.2 24.16 1867 7.22 1.32
490.44 1.03 3.36 -1.03 0.0873 1.6 -- -- -0.213 17.6 23.36 1852 7.21 1.36
489.15 1.03 3.34 -0.964 -- 1.56 -- 1.27 -0.183 -- 24.19 1873 7.22 1.35
546.37 1.1 3.4 -0.819 0.108 -- -0.626 -- -0.427 9.84 -- -- -- --
547.3 1.1 3.41 -0.839 0.145 -- -- -- -0.425 12.9 -- -- -- --
490.83 1.03 3.36 -1.04 -- 1.6 -- -- -0.215 -- 23.37 1846 7.2 1.36
516.54 1.06 3.36 -- 0.154 1.47 -- -- -0.138 16.2 24.19 1890 7.35 1.03
548.61 1.09 3.41 -0.845 -- -- -- -- -0.428 -- -- -- -- --
565.86 1.11 3.38 -- 0.159 -- -- -- -0.332 13.1 -- -- -- --
515.21 1.06 3.35 -- -- 1.5 -- -- -0.11 -- 24.19 1930 7.28 1.07
567.43 1.11 3.39 -- -- -- -- -- -0.334 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 501.82 radiation 20 4320 > th dose independent rect. 7 1
16 504.51 radiation 20 4320 > th dose dependent rect. 7 1
30 504.59 temperature 30 4320 < th dose independent rect. 5 4
31 504.63 temperature 30 4320 < th dose independent rect. 23 10
60 506.32 temperature 30 4320 > th dose independent rect. 8 1
74 507.69 temperature 30 270 < th dose independent rect. 3 13
88 507.80 radiation 30 4320 < th dose independent rect. 5 4
92 507.89 radiation 30 4320 < th dose independent rect. 17 16
93 507.91 radiation 30 4320 < th dose independent rect. 20 13
101 507.99 radiation 20 720 > th dose dependent rect. 16 17
103 508.08 temperature 30 720 > th dose independent rect. 8 1
117 508.18 radiation 20 720 < th dose independent rect. 19 14
118 508.31 radiation 40 720 < th dose independent rect. 19 18
120 508.43 radiation 40 720 < th dose independent rect. 19 16
121 508.47 radiation 20 720 > th dose dependent rect. 7 2
153 509.20 temperature 30 4320 > th dose dependent rect. 8 2
167 509.26 temperature 30 720 > th dose dependent rect. 8 2
217 509.63 radiation 1 1440 > th dose dependent rect. 10 3
232 509.71 radiation 30 1440 > th dose independent rect. 15 22
233 509.77 radiation 20 1440 > th dose dependent rect. 15 22
237 509.85 radiation 20 720 < th dose independent rect. 1 7
252 509.92 radiation 30 1440 < th dose independent rect. 15 22
253 509.94 radiation 30 1440 > th dose independent rect. 8 5
288 510.12 radiation 40 720 < th dose independent rect. 3 10
289 510.13 radiation 20 720 > th dose independent rect. 7 2
291 510.17 radiation 20 720 > th dose independent sin 11 NA
306 510.22 radiation 40 1440 > th dose independent rect. 10 3
314 510.31 radiation 30 720 > th dose independent rect. 16 17
322 510.42 radiation 20 1440 > th dose dependent rect. 8 5
342 510.45 radiation 40 1440 > th dose independent rect. 10 1
345 510.47 radiation 40 720 < th dose dependent rect. 19 16
364 510.51 temperature 30 270 < th dose independent rect. 18 23
369 510.54 radiation 10 720 > th dose dependent sin 11 NA
370 510.55 radiation 30 1440 < th dose independent sin 11 NA
394 510.71 radiation 30 1440 < th dose independent rect. 8 5
408 510.72 radiation 40 720 < th dose dependent rect. 19 18
463 510.79 radiation 30 1440 < th dose independent rect. 5 8
491 510.91 radiation 40 1440 < th dose independent rect. 10 1
513 511.01 radiation 40 1440 < th dose independent rect. 10 3
634 511.53 radiation 40 1440 < th dose dependent rect. 10 3
639 511.55 wind 3 30 < th dose dependent rect. 18 1
653 511.56 radiation 40 1440 < th dose dependent rect. 15 22
684 511.76 radiation 40 1440 < th dose dependent rect. 8 5
698 511.89 radiation 40 720 < th dose dependent rect. 3 8
705 511.90 radiation 40 720 < th dose dependent rect. 3 10
771 512.09 temperature 25 90 > th dose dependent rect. 17 22
854 512.30 radiation 10 1440 > th dose independent rect. 11 22
856 512.31 radiation 40 720 < th dose dependent rect. 19 14
873 512.47 radiation 10 1440 > th dose dependent rect. 10 23
883 512.50 radiation 40 1440 < th dose dependent rect. 8 10
887 512.51 radiation 40 1440 < th dose dependent rect. 8 15
945 512.63 temperature 30 270 < th dose independent rect. 3 18
1000 512.73 temperature 30 270 < th dose independent rect. 2 20