Os12g0440200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0440200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.9 | 0.378 | 2.86 | 0.176 | 0.089 | 0.297 | 0.319 | 1.01 | 0.025 | 2.97 | 49.06 | 12 | -- | -- |
| 66.48 | 0.38 | 2.86 | 0.19 | 0.0728 | 0.418 | 0.0747 | -- | 0.0514 | 2.77 | 51.2 | 13 | -- | -- |
| 65.12 | 0.376 | 2.87 | 0.168 | 0.0863 | 0.299 | -- | 0.949 | 0.0222 | 2.81 | 48.77 | 19 | -- | -- |
| 66.49 | 0.38 | 2.86 | 0.193 | 0.0762 | 0.435 | -- | -- | 0.0498 | 2.46 | 51.68 | 13 | -- | -- |
| 65.56 | 0.377 | 2.87 | 0.178 | -- | 0.273 | -- | 0.952 | 0.0257 | -- | 48.87 | 19 | -- | -- |
| 68.06 | 0.387 | 2.86 | 0.185 | 0.0407 | -- | 0.305 | -- | 0.0334 | 6.25 | -- | -- | -- | -- |
| 68.27 | 0.387 | 2.86 | 0.188 | 0.0456 | -- | -- | -- | 0.0321 | 4.8 | -- | -- | -- | -- |
| 66.81 | 0.381 | 2.86 | 0.197 | -- | 0.402 | -- | -- | 0.0492 | -- | 52.14 | 13 | -- | -- |
| 67.48 | 0.383 | 2.86 | -- | 0.0792 | 0.432 | -- | -- | 0.0287 | 2.34 | 51.48 | 13 | -- | -- |
| 68.38 | 0.386 | 2.86 | 0.19 | -- | -- | -- | -- | 0.0333 | -- | -- | -- | -- | -- |
| 69.21 | 0.389 | 2.86 | -- | 0.049 | -- | -- | -- | 0.0112 | 4.69 | -- | -- | -- | -- |
| 67.79 | 0.383 | 2.86 | -- | -- | 0.399 | -- | -- | 0.0312 | -- | 52.18 | 15 | -- | -- |
| 69.33 | 0.389 | 2.86 | -- | -- | -- | -- | -- | 0.0122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.15 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 3 | 56.34 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 6 | 56.47 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 7 | 56.49 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 8 | 56.51 | wind | 5.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 15 | 56.58 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 17 | 56.58 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 18 | 56.58 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 21 | 56.58 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 22 | 56.58 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 24 | 56.58 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 29 | 56.58 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 30 | 56.58 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 31 | 56.58 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 36 | 56.58 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 38 | 56.59 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 41 | 56.61 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 42 | 56.68 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 52 | 57.36 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 57 | 57.86 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 67 | 58.25 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 127 | 63.62 | radiation | 40.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 131 | 63.83 | radiation | 40.0 | 10 | > th | dose independent | rect. | 11 | 1 |
| 133 | 63.89 | radiation | 40.0 | 90 | > th | dose independent | rect. | 11 | 1 |
| 141 | 64.22 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 8 |
| 175 | 64.40 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 176 | 64.40 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 187 | 64.53 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 195 | 64.58 | radiation | 30.0 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 197 | 64.61 | radiation | 30.0 | 90 | > th | dose dependent | rect. | 11 | 1 |
| 288 | 65.12 | wind | 1.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 292 | 65.15 | radiation | 40.0 | 10 | > th | dose dependent | rect. | 14 | 22 |
| 372 | 65.31 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 4 | 4 |
| 494 | 65.42 | humidity | 50.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 587 | 65.42 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 685 | 65.43 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 3 | 6 |
| 693 | 65.46 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 4 | 4 |
| 696 | 65.47 | radiation | 40.0 | 10 | < th | dose independent | rect. | 16 | 20 |
| 699 | 65.48 | radiation | 40.0 | 10 | > th | dose dependent | sin | 22 | NA |
| 703 | 65.48 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 4 | 4 |
| 713 | 65.51 | humidity | 90.0 | 90 | < th | dose independent | rect. | 1 | 2 |
| 747 | 65.54 | radiation | 40.0 | 10 | > th | dose dependent | no | NA | NA |
| 926 | 65.56 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 22 |
| 927 | 65.57 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 982 | 65.61 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 3 | 5 |
| 983 | 65.61 | radiation | 40.0 | 10 | > th | dose independent | rect. | 14 | 22 |
| 992 | 65.62 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 8 |