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Os12g0438400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0294) R2 : 0.794
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.46 (0.0912) R2dC : 0.186 R2C : 0.466
β3 : -2.53 (0.123) R2dE : 0.303 R2E : 0.587
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.396 (0.062) R2dN8 : 0.0241 R2N8 : 0.0181
σ : 0.553
deviance : 141.04
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C
peak time of C : 14.4
E
wheather : radiation
threshold : 0.42
memory length : 158
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 20.9
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
122.1 0.519 10.7 -0.522 1.56 -2.51 0.554 -2.54 0.348 14.5 0.2688 152 20.3 --
129.5 0.53 10.7 -0.447 1.48 -2.49 1.08 -- 0.374 14.3 0.4138 158 20.9 --
122.58 0.516 10.7 -0.529 1.56 -2.53 -- -2.99 0.365 14.5 0.2701 160 20.2 --
135.46 0.542 10.7 -0.467 1.49 -2.55 -- -- 0.347 14.4 0.3479 158 20.8 --
147.66 0.566 10.7 -0.52 -- -3.24 -- -1.87 0.313 -- 0.2418 211 0.428 --
225.51 0.704 10.7 -0.376 2.75 -- 1.95 -- 0.403 15.4 -- -- -- --
237.57 0.722 10.7 -0.34 2.77 -- -- -- 0.415 15.4 -- -- -- --
155.38 0.581 10.7 -0.445 -- -3.26 -- -- 0.313 -- 0.279 217 0.593 --
141.04 0.553 10.7 -- 1.46 -2.53 -- -- 0.396 14.4 0.42 158 20.9 --
667.67 1.21 10.7 -0.457 -- -- -- -- 0.342 -- -- -- -- --
240.61 0.726 10.7 -- 2.77 -- -- -- 0.453 15.4 -- -- -- --
158.85 0.587 10.7 -- -- -3.14 -- -- 0.378 -- 0.2704 222 0.904 --
673.17 1.21 10.7 -- -- -- -- -- 0.392 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 119.95 temperature 15.0 270 > th dose independent rect. 4 21
2 120.10 temperature 15.0 270 > th dose independent rect. 5 19
3 120.48 precipitation 0.1 270 < th dose independent rect. 1 3
4 120.48 precipitation 0.1 270 < th dose dependent rect. 1 3
5 120.73 precipitation 0.1 270 < th dose independent rect. 4 21
6 120.73 precipitation 0.1 270 < th dose dependent rect. 4 21
8 121.28 temperature 10.0 10 > th dose dependent rect. 6 20
10 121.57 temperature 10.0 90 > th dose dependent rect. 6 20
11 121.58 temperature 10.0 270 > th dose independent rect. 1 3
13 121.58 temperature 30.0 270 < th dose independent rect. 1 3
14 121.58 humidity 50.0 270 > th dose independent rect. 1 3
17 121.58 atmosphere 995.0 270 > th dose independent rect. 1 3
18 121.58 atmosphere 1010.0 270 < th dose independent rect. 1 3
20 121.58 radiation 1.0 270 < th dose independent rect. 1 3
26 121.58 radiation 1.0 270 < th dose dependent rect. 1 3
31 121.59 wind 9.0 270 < th dose independent rect. 1 3
33 121.95 wind 9.0 270 < th dose independent rect. 4 21
35 122.80 precipitation 0.1 270 < th dose independent rect. 5 19
36 122.80 precipitation 0.1 270 < th dose dependent rect. 5 19
38 123.08 precipitation 0.1 270 < th dose independent rect. 24 5
39 123.08 precipitation 0.1 270 < th dose dependent rect. 24 5
48 123.88 wind 9.0 90 < th dose independent rect. 6 20
49 124.03 radiation 1.0 270 < th dose dependent rect. 24 5
50 124.17 wind 1.0 270 > th dose independent rect. 1 3
51 124.27 humidity 50.0 270 > th dose dependent rect. 1 3
53 124.28 temperature 10.0 270 > th dose independent rect. 24 5
54 124.28 temperature 30.0 270 < th dose independent rect. 24 5
55 124.28 humidity 50.0 270 > th dose independent rect. 24 5
58 124.28 atmosphere 995.0 270 > th dose independent rect. 24 5
59 124.28 radiation 20.0 270 < th dose independent rect. 24 5
66 124.29 wind 9.0 270 < th dose independent rect. 24 5
67 124.30 radiation 1.0 270 < th dose independent rect. 24 5
70 124.33 atmosphere 1015.0 270 < th dose independent rect. 24 5
94 124.89 precipitation 0.1 10 < th dose independent rect. 6 20
95 124.89 precipitation 0.1 10 < th dose dependent rect. 6 20
115 124.98 wind 9.0 90 < th dose dependent rect. 2 4
120 125.50 temperature 15.0 10 > th dose independent rect. 6 20
121 125.65 radiation 1.0 270 < th dose dependent rect. 24 11
136 126.52 wind 9.0 10 < th dose independent rect. 6 20
137 126.66 humidity 50.0 270 > th dose dependent rect. 24 5
145 127.16 wind 9.0 10 < th dose independent rect. 2 4
146 127.16 temperature 10.0 10 > th dose independent rect. 2 4
148 127.16 temperature 30.0 10 < th dose independent rect. 2 4
149 127.16 humidity 50.0 10 > th dose independent rect. 2 4
152 127.16 atmosphere 995.0 10 > th dose independent rect. 2 4
153 127.16 atmosphere 1010.0 10 < th dose independent rect. 2 4
155 127.16 radiation 20.0 10 < th dose independent rect. 2 4
242 128.75 wind 9.0 1440 < th dose independent rect. 3 4
243 128.75 temperature 10.0 1440 > th dose independent rect. 3 4
246 128.75 temperature 30.0 1440 < th dose independent rect. 3 4
250 128.75 humidity 50.0 1440 > th dose independent rect. 3 4
255 128.75 atmosphere 995.0 1440 > th dose independent rect. 3 4
256 128.75 radiation 40.0 1440 < th dose independent rect. 3 4
260 128.75 temperature 10.0 1440 > th dose independent rect. 7 20
269 128.92 humidity 50.0 10 > th dose dependent rect. 2 4
305 129.65 atmosphere 1015.0 270 < th dose independent rect. 5 19
380 131.04 atmosphere 995.0 90 > th dose dependent rect. 2 4
381 131.08 radiation 1.0 270 < th dose independent rect. 24 11
417 131.66 atmosphere 995.0 90 > th dose independent rect. 6 20
436 132.19 atmosphere 1015.0 10 < th dose independent rect. 6 20
449 132.62 temperature 10.0 90 > th dose dependent rect. 2 4
475 133.42 radiation 1.0 270 < th dose independent rect. 24 17
480 133.50 atmosphere 995.0 10 > th dose independent rect. 6 20
505 133.58 wind 1.0 270 > th dose independent rect. 24 5
526 133.77 temperature 30.0 270 < th dose dependent rect. 1 3
530 133.92 atmosphere 995.0 10 > th dose dependent rect. 3 3
627 136.12 temperature 10.0 10 > th dose dependent rect. 2 4
647 136.94 temperature 30.0 270 < th dose dependent rect. 24 5
649 137.00 temperature 10.0 270 > th dose dependent rect. 2 1
653 137.02 atmosphere 995.0 270 > th dose dependent rect. 24 5
669 137.08 atmosphere 1015.0 1440 < th dose independent rect. 4 3
701 137.92 atmosphere 995.0 270 > th dose independent rect. 4 21
707 138.04 temperature 30.0 90 < th dose dependent rect. 3 2
715 138.22 temperature 30.0 10 < th dose dependent rect. 2 4
748 138.73 radiation 1.0 90 < th dose dependent sin 2 NA
765 139.18 wind 1.0 270 > th dose independent rect. 5 19
766 139.27 humidity 50.0 10 > th dose independent rect. 6 20
767 139.27 humidity 50.0 90 > th dose independent rect. 6 20
771 139.30 radiation 1.0 90 < th dose dependent rect. 3 8
783 139.53 radiation 40.0 90 < th dose dependent rect. 15 15
787 139.69 radiation 1.0 270 < th dose dependent sin 5 NA
826 140.41 wind 9.0 90 < th dose dependent rect. 6 20
880 140.83 temperature 10.0 270 > th dose dependent rect. 19 5
887 140.91 radiation 1.0 90 < th dose dependent rect. 3 16
890 140.96 radiation 1.0 90 < th dose dependent rect. 3 14
948 141.64 radiation 1.0 90 < th dose independent rect. 3 8