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Os12g0431100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : AAA ATPase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.39 (0.0558) R2 : 0.584
β1 : 5.78 (0.306) R2dD : 0.765 R2D : -0.153
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.28 (0.215) R2dE : 0.121 R2E : 0.00423
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10.2 (0.946) R2dD*E : 0.261 R2D*E : -0.51
γ1 : 2.12 (0.122) R2dN8 : 0.376 R2N8 : 0.163
σ : 1.04
deviance : 499.32
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C
peak time of C : --
E
wheather : radiation
threshold : 0.17
memory length : 4292
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.8
open length of G : 11.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
492.06 1.04 9.39 5.95 0.423 -2.27 -0.303 -10.4 2.1 21 0.17 4316 17.8 12
638.73 1.18 9.31 4.6 0.358 -1.57 -0.811 -- 1.98 20.9 12.11 15839 17.9 12.6
492.06 1.03 9.39 5.98 0.4 -2.25 -- -10.4 2.12 21 0.1533 4313 17.8 11.9
613.8 1.15 9.26 4.8 0.0323 -1.68 -- -- 2.32 8.43 5.504 12922 17.5 12.3
499.32 1.04 9.39 5.78 -- -2.28 -- -10.2 2.12 -- 0.17 4292 17.8 11.9
693.6 1.23 9.38 3.23 0.503 -- 0.221 -- 1.99 22.6 -- -- -- --
693.79 1.23 9.38 3.22 0.503 -- -- -- 1.99 22.5 -- -- -- --
611.41 1.15 9.31 4.67 -- -1.68 -- -- 1.89 -- 12.1 31596 16.2 12.7
664 1.2 9.28 -- 1.16 -3.93 -- -- 0.797 9 2.806 14074 19.7 13.8
709.34 1.24 9.36 3.23 -- -- -- -- 2 -- -- -- -- --
966.91 1.45 9.46 -- 0.527 -- -- -- 1.64 22.9 -- -- -- --
501.9 1.04 9.73 -- -- -3.4 -- -- 0.395 -- 1.56 47520 19.3 11.2
984.18 1.46 9.45 -- -- -- -- -- 1.64 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 467.74 precipitation 0.1 43200 > th dose dependent rect. 1 5
2 467.86 precipitation 0.1 43200 < th dose independent rect. 2 3
3 467.86 precipitation 0.1 43200 < th dose dependent rect. 2 3
4 467.89 precipitation 0.1 43200 > th dose independent rect. 1 5
5 468.05 precipitation 0.1 43200 > th dose independent rect. 2 3
6 468.21 precipitation 0.1 43200 < th dose independent rect. 1 5
7 468.21 precipitation 0.1 43200 < th dose dependent rect. 1 5
13 469.54 precipitation 0.1 43200 > th dose dependent rect. 23 8
22 470.60 precipitation 0.1 43200 < th dose independent rect. 23 8
23 470.60 precipitation 0.1 43200 < th dose dependent rect. 23 8
26 470.68 humidity 90.0 14400 < th dose independent rect. 1 3
27 470.70 precipitation 0.1 43200 > th dose independent rect. 23 8
111 476.43 humidity 90.0 43200 < th dose independent rect. 5 1
141 478.52 radiation 1.0 43200 > th dose independent rect. 18 12
152 479.27 wind 3.0 43200 < th dose dependent rect. 22 1
164 480.02 humidity 90.0 14400 < th dose independent rect. 24 1
175 480.95 temperature 20.0 14400 < th dose dependent rect. 6 1
178 481.25 radiation 1.0 43200 < th dose independent rect. 18 12
187 482.03 humidity 80.0 14400 > th dose dependent rect. 5 2
191 482.25 humidity 50.0 14400 > th dose dependent rect. 6 1
211 483.47 humidity 60.0 43200 > th dose independent rect. 2 7
214 483.76 humidity 70.0 43200 < th dose dependent rect. 2 7
223 484.42 precipitation 0.1 43200 > th dose dependent rect. 23 15
242 486.33 humidity 70.0 43200 < th dose independent rect. 2 6
247 486.60 humidity 90.0 43200 > th dose independent rect. 24 1
253 486.91 wind 1.0 14400 < th dose dependent rect. 23 3
257 487.27 wind 7.0 43200 > th dose independent rect. 18 1
258 487.28 wind 7.0 43200 > th dose dependent rect. 18 1
261 487.46 precipitation 0.1 43200 > th dose dependent sin 6 NA
264 487.62 wind 1.0 14400 < th dose dependent rect. 23 5
267 487.66 radiation 1.0 43200 < th dose dependent rect. 18 12
278 488.16 radiation 1.0 43200 < th dose dependent rect. 22 8
283 488.29 radiation 1.0 43200 < th dose dependent rect. 4 2
291 488.62 radiation 1.0 43200 > th dose independent rect. 4 2
302 488.84 radiation 1.0 43200 < th dose independent rect. 4 2
304 488.87 radiation 1.0 43200 < th dose independent rect. 1 5
309 488.91 temperature 30.0 43200 < th dose dependent rect. 6 1
310 488.93 radiation 1.0 43200 < th dose independent rect. 22 8
318 489.16 temperature 10.0 43200 > th dose dependent rect. 6 1
330 489.61 wind 1.0 43200 < th dose dependent rect. 22 14
332 489.71 temperature 20.0 14400 < th dose dependent rect. 5 4
346 490.00 humidity 80.0 43200 < th dose independent rect. 16 1
349 490.06 precipitation 0.1 43200 > th dose independent sin 7 NA
350 490.06 precipitation 0.1 43200 < th dose independent sin 7 NA
351 490.06 precipitation 0.1 43200 < th dose dependent sin 7 NA
357 490.28 radiation 1.0 43200 < th dose dependent rect. 18 8
358 490.30 precipitation 0.1 43200 > th dose dependent rect. 19 1
378 490.73 wind 1.0 43200 < th dose dependent rect. 20 16
381 490.80 atmosphere 1010.0 43200 > th dose dependent rect. 7 1
382 490.85 radiation 1.0 43200 < th dose dependent rect. 18 3
398 491.14 radiation 1.0 43200 > th dose independent rect. 17 2
409 491.27 humidity 60.0 43200 > th dose dependent rect. 14 17
428 491.48 atmosphere 1010.0 43200 > th dose dependent rect. 16 1
437 491.60 humidity 80.0 43200 > th dose independent rect. 15 4
442 491.72 humidity 80.0 43200 < th dose independent rect. 14 5
445 491.75 atmosphere 1010.0 43200 > th dose dependent rect. 14 3
454 491.85 atmosphere 1010.0 43200 > th dose dependent rect. 6 12
460 491.90 humidity 70.0 43200 > th dose dependent rect. 21 1
482 492.00 radiation 1.0 43200 < th dose independent rect. 17 4
494 492.04 radiation 1.0 43200 < th dose independent rect. 17 9
505 492.10 humidity 60.0 43200 > th dose dependent rect. 14 13
531 492.22 atmosphere 1010.0 43200 > th dose dependent rect. 11 7
544 492.26 atmosphere 1010.0 43200 > th dose dependent sin 23 NA
566 492.35 atmosphere 1010.0 43200 > th dose dependent rect. 11 10
612 492.48 wind 1.0 43200 < th dose dependent rect. 20 18
634 492.59 humidity 90.0 43200 > th dose independent rect. 24 6
643 492.61 wind 1.0 14400 < th dose dependent rect. 22 10
659 492.69 humidity 60.0 43200 > th dose dependent sin 15 NA
686 492.80 wind 7.0 43200 < th dose independent rect. 18 1
716 492.90 precipitation 0.1 43200 > th dose independent rect. 23 1
718 492.90 precipitation 0.1 43200 > th dose dependent rect. 23 1
720 492.91 humidity 90.0 43200 > th dose independent rect. 5 1
727 492.94 precipitation 0.1 43200 < th dose independent rect. 23 1
729 492.94 precipitation 0.1 43200 < th dose dependent rect. 23 1
751 493.03 humidity 70.0 43200 > th dose dependent rect. 15 2
771 493.13 atmosphere 1010.0 43200 > th dose dependent rect. 11 1
782 493.17 humidity 80.0 43200 > th dose independent rect. 17 1
783 493.17 atmosphere 1010.0 43200 > th dose dependent rect. 19 2
828 493.36 humidity 90.0 43200 > th dose independent rect. 21 9
844 493.42 atmosphere 1015.0 43200 > th dose independent rect. 23 1
846 493.42 humidity 90.0 43200 < th dose independent rect. 21 9
908 493.62 atmosphere 1015.0 43200 < th dose independent rect. 23 1
912 493.64 atmosphere 1010.0 43200 > th dose dependent no NA NA
914 493.64 atmosphere 1010.0 43200 > th dose dependent rect. 13 23
916 493.65 atmosphere 1010.0 43200 > th dose dependent rect. 11 23
919 493.66 atmosphere 1010.0 43200 > th dose dependent rect. 19 23
949 493.73 atmosphere 1010.0 43200 > th dose dependent rect. 16 23