Os12g0428700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0428700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 221.59 | 0.699 | 7.78 | -1.52 | 2.37 | 1.29 | -2.51 | -0.974 | -1.08 | 21.8 | 25.7 | 1383 | -- | -- |
| 222.41 | 0.695 | 7.75 | -1.24 | 2.35 | 1.22 | -2.55 | -- | -0.993 | 21.8 | 25.7 | 1383 | -- | -- |
| 245.41 | 0.73 | 7.79 | -1.54 | 2.38 | 1.29 | -- | -1.36 | -1.11 | 21.8 | 25.8 | 1393 | -- | -- |
| 247.3 | 0.732 | 7.75 | -1.14 | 2.38 | 1.2 | -- | -- | -0.993 | 21.8 | 25.7 | 1393 | -- | -- |
| 432.71 | 0.969 | 7.8 | -1.81 | -- | 2.27 | -- | -1.42 | -1.44 | -- | 25.2 | 772 | -- | -- |
| 266.94 | 0.766 | 7.66 | -0.825 | 2.42 | -- | -2.47 | -- | -0.585 | 22 | -- | -- | -- | -- |
| 290.73 | 0.798 | 7.65 | -0.73 | 2.43 | -- | -- | -- | -0.58 | 22 | -- | -- | -- | -- |
| 441.04 | 0.978 | 7.76 | -1.35 | -- | 2.16 | -- | -- | -1.35 | -- | 25.27 | 773 | -- | -- |
| 278.5 | 0.777 | 7.72 | -- | 2.37 | 0.977 | -- | -- | -0.88 | 21.9 | 25.41 | 1379 | -- | -- |
| 645.44 | 1.19 | 7.59 | -0.7 | -- | -- | -- | -- | -0.579 | -- | -- | -- | -- | -- |
| 304.79 | 0.817 | 7.64 | -- | 2.42 | -- | -- | -- | -0.499 | 22 | -- | -- | -- | -- |
| 486.58 | 1.03 | 7.71 | -- | -- | 1.92 | -- | -- | -1.12 | -- | 25.2 | 761 | -- | -- |
| 658.37 | 1.2 | 7.57 | -- | -- | -- | -- | -- | -0.501 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 211.85 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 2 | 211.96 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 3 | 212.44 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 9 | 213.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 45 | 217.10 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 15 |
| 57 | 217.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 100 | 217.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 101 | 217.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 111 | 218.03 | temperature | 25 | 1440 | > th | dose dependent | sin | 15 | NA |
| 151 | 218.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 211 | 219.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 228 | 219.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 263 | 220.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 365 | 220.97 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 430 | 221.49 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 435 | 221.53 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 441 | 221.57 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 13 |
| 465 | 221.70 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 489 | 221.89 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 509 | 221.97 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 534 | 222.15 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 557 | 222.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 558 | 222.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 571 | 222.34 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 7 |
| 594 | 222.46 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 611 | 222.53 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 618 | 222.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 619 | 222.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 18 |
| 629 | 222.64 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 651 | 222.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 688 | 222.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 839 | 223.23 | radiation | 1 | 1440 | < th | dose dependent | sin | 17 | NA |
| 843 | 223.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 886 | 223.37 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 967 | 223.66 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 983 | 223.71 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 12 |