Os12g0428200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 9 protein.
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Os12g0428200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 9 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.48 | 0.291 | 9.79 | -0.428 | 0.412 | 0.883 | -0.975 | 0.349 | -0.144 | 0.387 | 9.976 | 308 | -- | -- |
| 38.53 | 0.289 | 9.79 | -0.477 | 0.363 | 0.874 | -1.01 | -- | -0.156 | 0.433 | 10.65 | 396 | -- | -- |
| 41.06 | 0.301 | 9.77 | -0.207 | 0.572 | 0.904 | -- | 1.64 | -0.0953 | 23.7 | 8.602 | 134 | -- | -- |
| 42.9 | 0.305 | 9.79 | -0.449 | 0.423 | 0.911 | -- | -- | -0.156 | 0.393 | 13.81 | 295 | -- | -- |
| 47.11 | 0.32 | 9.8 | -0.611 | -- | 0.868 | -- | -0.612 | -0.235 | -- | 14.9 | 714 | -- | -- |
| 48.36 | 0.326 | 9.77 | -0.293 | 0.388 | -- | -0.936 | -- | -0.0307 | 22.7 | -- | -- | -- | -- |
| 51.69 | 0.337 | 9.77 | -0.252 | 0.405 | -- | -- | -- | -0.0259 | 22 | -- | -- | -- | -- |
| 46.97 | 0.319 | 9.79 | -0.49 | -- | 0.965 | -- | -- | -0.172 | -- | 7.257 | 716 | -- | -- |
| 47.15 | 0.32 | 9.78 | -- | 0.455 | 0.588 | -- | -- | -0.0818 | 23.9 | 20.71 | 180 | -- | -- |
| 61.54 | 0.367 | 9.76 | -0.248 | -- | -- | -- | -- | -0.0257 | -- | -- | -- | -- | -- |
| 53.37 | 0.342 | 9.76 | -- | 0.404 | -- | -- | -- | 0.00224 | 21.9 | -- | -- | -- | -- |
| 52.66 | 0.338 | 9.77 | -- | -- | 0.777 | -- | -- | -0.0944 | -- | 14.7 | 681 | -- | -- |
| 63.16 | 0.371 | 9.75 | -- | -- | -- | -- | -- | 0.00174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.48 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 3 | 37.65 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 4 | 37.78 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 7 | 37.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 16 | 38.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 17 | 38.13 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 26 | 38.27 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 31 | 38.28 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 35 | 38.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 60 | 38.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 90 | 38.51 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 104 | 38.58 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 107 | 38.59 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 117 | 38.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 177 | 38.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 179 | 38.79 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 188 | 38.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 212 | 38.87 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 213 | 38.88 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 19 |
| 254 | 38.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 266 | 38.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 295 | 39.07 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 314 | 39.10 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 320 | 39.11 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 15 |
| 327 | 39.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 331 | 39.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 333 | 39.13 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 337 | 39.13 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 359 | 39.16 | temperature | 20 | 30 | > th | dose dependent | rect. | 12 | 21 |
| 361 | 39.16 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 366 | 39.17 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 382 | 39.19 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 458 | 39.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 463 | 39.34 | temperature | 25 | 30 | > th | dose independent | rect. | 23 | 21 |
| 488 | 39.39 | temperature | 25 | 30 | > th | dose independent | rect. | 12 | 21 |
| 494 | 39.39 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 630 | 39.58 | humidity | 60 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 663 | 39.63 | temperature | 25 | 30 | > th | dose independent | rect. | 12 | 23 |
| 682 | 39.66 | temperature | 15 | 270 | > th | dose dependent | sin | 23 | NA |
| 737 | 39.72 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 856 | 39.86 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 21 |
| 857 | 39.86 | temperature | 15 | 720 | > th | dose dependent | sin | 3 | NA |
| 910 | 39.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 913 | 39.93 | temperature | 25 | 10 | > th | dose independent | rect. | 23 | 23 |
| 956 | 39.98 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |