Os12g0427600 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0427600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Proteinase inhibitor I9, subtilisin propeptide domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.13	(0.0444)	R²	:	0.202
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	6.94	(0.661)	R²_dE	:	0.193	R²_E	:	0.195
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.173	(0.0936)	R²_dN8	:	0.00749	R²_N8	:	0.00925
σ	:	0.835
deviance	:	321.45
__

_____

C
peak time of C	:	--
E
wheather	:	wind
threshold	:	6.947
memory length	:	218
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	12.3
open length of G	:	0.0666

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
316.19	0.835	3.16	0.123	0.0515	13.5	1.4	29.3	-0.186	22	7.002	175	12.2	0.169
331.76	0.848	3.11	0.115	0.143	9.73	-1.64	--	-0.0378	7.02	7.195	223	12.2	0.117
323.78	0.838	3.16	0.0561	0.063	13.8	--	30.4	-0.192	0.426	7.004	175	12.2	0.181
327.8	0.843	3.08	0.113	0.0474	7.55	--	--	-0.0456	4.22	7.131	216	12.2	0.109
324	0.838	3.16	0.0651	--	13.4	--	28.4	-0.187	--	7.1	172	12.2	0.183
389.55	0.925	3.15	-0.0687	0.00506	--	-1.47	--	-0.232	10.6	--	--	--	--
398.34	0.935	3.15	-0.126	0.0575	--	--	--	-0.235	16	--	--	--	--
324.1	0.838	3.11	-0.0234	--	7.19	--	--	-0.168	--	7.004	211	12.2	0.183
325.59	0.84	3.14	--	0.0546	7.43	--	--	-0.187	1.07	7.157	186	12.2	0.116
398.52	0.933	3.15	-0.128	--	--	--	--	-0.236	--	--	--	--	--
398.76	0.934	3.15	--	0.0599	--	--	--	-0.221	16	--	--	--	--
321.45	0.835	3.13	--	--	6.94	--	--	-0.173	--	6.947	218	12.3	0.0666
398.96	0.932	3.15	--	--	--	--	--	-0.222	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	348.68	wind	7	90	> th	dose independent	rect.	12	1
6	350.01	wind	5	30	> th	dose dependent	rect.	13	1
74	367.07	radiation	30	10	< th	dose independent	rect.	14	1
76	367.16	atmosphere	1000	10	< th	dose independent	rect.	1	12
87	367.82	wind	1	90	< th	dose independent	rect.	16	1
88	367.82	wind	1	90	< th	dose dependent	rect.	16	1
104	368.64	atmosphere	1000	720	> th	dose independent	sin	9	NA
105	368.64	atmosphere	1000	720	> th	dose independent	rect.	18	17
113	369.11	atmosphere	1000	720	< th	dose independent	rect.	1	1
117	369.27	atmosphere	1000	720	< th	dose independent	sin	10	NA
122	369.58	wind	7	270	> th	dose dependent	rect.	10	4
129	369.81	atmosphere	1000	720	> th	dose independent	rect.	23	8
138	369.97	atmosphere	1000	720	< th	dose independent	rect.	20	18
142	370.22	atmosphere	1000	90	< th	dose independent	rect.	24	15
144	370.23	atmosphere	1000	720	< th	dose independent	rect.	17	19
145	370.24	atmosphere	1005	10	< th	dose dependent	rect.	24	13
150	370.41	atmosphere	1000	720	< th	dose independent	rect.	18	14
152	370.44	atmosphere	1000	720	< th	dose independent	sin	7	NA
154	370.46	atmosphere	1000	30	> th	dose independent	rect.	14	23
197	371.18	atmosphere	1000	1440	> th	dose independent	rect.	1	1
258	371.81	humidity	60	30	> th	dose independent	rect.	13	1
270	371.94	atmosphere	1000	10	< th	dose independent	rect.	22	15
283	372.09	atmosphere	1000	90	< th	dose independent	sin	5	NA
285	372.10	atmosphere	1000	720	< th	dose independent	rect.	21	11
299	372.12	atmosphere	1005	10	< th	dose dependent	rect.	21	16
328	372.31	atmosphere	1000	90	> th	dose independent	sin	4	NA
330	372.31	atmosphere	1000	720	< th	dose independent	rect.	23	9
363	372.47	atmosphere	1000	720	> th	dose independent	rect.	18	8
373	372.52	atmosphere	995	30	> th	dose dependent	rect.	14	23
432	372.79	radiation	30	10	< th	dose dependent	rect.	14	1
591	373.62	atmosphere	1000	10	< th	dose independent	rect.	6	7
610	373.73	temperature	30	90	> th	dose independent	rect.	10	1
616	373.76	atmosphere	1000	720	> th	dose independent	rect.	21	15
634	373.81	temperature	30	90	> th	dose dependent	rect.	10	1
682	374.00	atmosphere	1000	10	< th	dose independent	rect.	10	2
704	374.08	atmosphere	1000	10	> th	dose independent	sin	3	NA
784	374.35	atmosphere	1005	10	< th	dose dependent	sin	5	NA
802	374.43	atmosphere	1015	720	< th	dose dependent	rect.	1	2
807	374.45	atmosphere	1000	90	< th	dose independent	rect.	10	1
864	374.68	atmosphere	1000	720	> th	dose independent	rect.	14	23
984	375.20	humidity	80	30	< th	dose independent	rect.	13	1