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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0427000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0108) R2 : 0.0105
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0498 (0.0226) R2dN8 : 0.0136 R2N8 : 0.0105
σ : 0.203
deviance : 18.84
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.49 0.202 2.93 0.0184 0.0452 0.128 2.07e-05 0.216 0.0284 7.44 89 6566 -- --
18.5 0.2 2.93 0.0138 0.0372 0.133 -0.0121 -- 0.0167 7.26 88.98 7998 -- --
18.49 0.2 2.93 0.0183 0.0452 0.128 -- 0.216 0.0284 7.44 89 6567 -- --
18.5 0.2 2.93 0.0138 0.0463 0.136 -- -- 0.0181 7.35 88.99 7995 -- --
18.56 0.201 2.93 0.0204 -- 0.13 -- 0.144 0.0256 -- 89 7114 -- --
18.77 0.203 2.92 -0.00534 0.0351 -- -0.0299 -- 0.0485 6.59 -- -- -- --
18.77 0.203 2.92 -0.00571 0.035 -- -- -- 0.0486 6.85 -- -- -- --
18.58 0.201 2.93 0.0129 -- 0.12 -- -- 0.0246 -- 87 17307 -- --
18.5 0.2 2.93 -- 0.0471 0.132 -- -- 0.0175 7.22 88 7945 -- --
18.84 0.203 2.92 -0.00495 -- -- -- -- 0.0493 -- -- -- -- --
18.77 0.203 2.92 -- 0.0349 -- -- -- 0.0493 6.86 -- -- -- --
18.58 0.201 2.93 -- -- 0.109 -- -- 0.024 -- 88.62 17313 -- --
18.84 0.203 2.92 -- -- -- -- -- 0.0498 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.77 temperature 25.0 30 > th dose dependent rect. 22 1
2 15.78 wind 9.0 1440 < th dose independent rect. 23 1
3 15.78 temperature 25.0 30 > th dose independent rect. 22 1
4 15.78 temperature 10.0 1440 > th dose independent rect. 23 1
7 15.78 temperature 30.0 1440 < th dose independent rect. 23 1
11 15.78 humidity 50.0 1440 > th dose independent rect. 23 1
21 15.78 humidity 90.0 30 < th dose independent rect. 22 1
22 15.78 atmosphere 995.0 1440 > th dose independent rect. 23 1
23 15.78 radiation 1.0 1440 < th dose independent rect. 23 1
43 15.78 temperature 10.0 1440 > th dose independent rect. 24 23
47 15.78 humidity 90.0 30 < th dose dependent rect. 22 1
48 15.78 radiation 1.0 1440 < th dose dependent rect. 23 1
53 15.79 wind 1.0 30 > th dose independent rect. 22 1
56 15.79 atmosphere 1005.0 30 > th dose independent rect. 22 1
57 15.79 wind 9.0 30 < th dose independent rect. 23 23
58 15.79 temperature 10.0 30 > th dose dependent rect. 22 1
60 15.79 atmosphere 995.0 30 > th dose dependent rect. 22 1
63 15.80 wind 5.0 30 < th dose independent rect. 22 1
66 15.80 temperature 10.0 30 > th dose independent rect. 22 1
68 15.80 temperature 30.0 30 < th dose independent rect. 22 1
69 15.80 humidity 50.0 30 > th dose independent rect. 22 1
72 15.80 atmosphere 995.0 30 > th dose independent rect. 22 1
74 15.80 atmosphere 1010.0 30 < th dose independent rect. 22 1
76 15.80 radiation 1.0 30 < th dose independent rect. 22 1
81 15.80 precipitation 0.1 30 < th dose independent rect. 22 1
82 15.80 temperature 10.0 30 > th dose independent rect. 23 23
83 15.80 wind 1.0 30 > th dose dependent rect. 22 1
84 15.80 wind 7.0 30 < th dose dependent rect. 22 1
86 15.80 radiation 1.0 30 < th dose dependent rect. 22 1
91 15.80 precipitation 0.1 30 < th dose dependent rect. 22 1
96 15.81 humidity 50.0 30 > th dose dependent rect. 22 1
101 15.83 atmosphere 1015.0 30 < th dose dependent rect. 22 1
103 15.84 temperature 30.0 30 < th dose dependent rect. 22 1
169 16.16 atmosphere 995.0 30 > th dose independent rect. 23 23
173 16.27 precipitation 0.1 30 < th dose independent rect. 23 23
174 16.27 precipitation 0.1 30 < th dose dependent rect. 23 23
181 16.42 precipitation 0.1 1440 < th dose independent rect. 23 1
182 16.42 precipitation 0.1 1440 < th dose dependent rect. 23 1
190 16.75 humidity 50.0 30 > th dose independent rect. 23 23
208 17.10 wind 7.0 10 > th dose dependent rect. 13 1
215 17.15 wind 9.0 10 > th dose independent rect. 13 1
249 17.22 atmosphere 1015.0 30 < th dose independent rect. 23 23
272 17.44 radiation 30.0 10 > th dose independent rect. 13 1
277 17.47 temperature 30.0 30 < th dose independent rect. 23 23
293 17.56 radiation 20.0 10 > th dose dependent rect. 13 1
303 17.59 wind 3.0 30 < th dose independent rect. 20 3
359 17.71 atmosphere 995.0 30 > th dose dependent rect. 23 23
365 17.73 wind 5.0 30 < th dose dependent rect. 20 3
398 17.75 radiation 20.0 30 < th dose dependent rect. 23 23
399 17.75 radiation 40.0 30 < th dose dependent rect. 23 23
410 17.77 wind 9.0 30 < th dose dependent rect. 23 23
431 17.82 radiation 40.0 30 < th dose independent rect. 23 23
500 17.86 atmosphere 995.0 90 > th dose dependent rect. 12 11
507 17.87 temperature 25.0 90 > th dose dependent rect. 21 8
512 17.88 radiation 10.0 30 < th dose independent rect. 23 23
517 17.89 atmosphere 1000.0 90 > th dose independent rect. 23 13
535 17.90 atmosphere 1005.0 30 > th dose dependent rect. 13 10
536 17.91 wind 1.0 30 < th dose independent rect. 10 1
537 17.91 temperature 10.0 1440 > th dose independent rect. 11 1
541 17.91 atmosphere 995.0 1440 > th dose independent rect. 11 1
544 17.91 precipitation 0.1 1440 < th dose independent rect. 11 1
551 17.91 temperature 10.0 1440 > th dose independent rect. 12 23
554 17.91 wind 1.0 30 < th dose dependent rect. 10 1
556 17.91 precipitation 0.1 1440 < th dose dependent rect. 11 1
562 17.93 wind 1.0 30 > th dose independent rect. 23 23
567 17.93 humidity 50.0 30 > th dose dependent rect. 23 23
661 17.98 humidity 70.0 30 < th dose independent rect. 10 1
662 17.98 atmosphere 1010.0 30 < th dose independent rect. 10 1
679 17.98 temperature 30.0 90 < th dose independent rect. 23 13
681 17.98 precipitation 0.1 720 < th dose independent rect. 1 22
682 17.98 temperature 25.0 30 > th dose dependent rect. 10 1
696 17.98 precipitation 0.1 720 < th dose dependent rect. 1 22
699 17.99 temperature 25.0 270 > th dose independent rect. 19 1
761 18.00 temperature 30.0 90 < th dose independent rect. 12 11
767 18.00 temperature 25.0 270 > th dose dependent rect. 19 1
783 18.00 radiation 40.0 30 < th dose dependent rect. 23 10
787 18.00 radiation 40.0 90 < th dose dependent rect. 23 12
797 18.01 radiation 40.0 30 < th dose independent rect. 10 1
801 18.01 atmosphere 1000.0 720 > th dose independent rect. 5 6
802 18.01 radiation 10.0 30 < th dose independent rect. 23 8
805 18.01 wind 1.0 90 > th dose independent rect. 12 11
806 18.01 humidity 50.0 90 > th dose independent rect. 23 13
808 18.01 atmosphere 995.0 720 > th dose independent rect. 13 22
822 18.02 radiation 40.0 10 < th dose independent sin 13 NA
823 18.02 temperature 25.0 30 > th dose independent rect. 10 1
842 18.02 wind 9.0 90 < th dose independent rect. 12 11
843 18.02 precipitation 0.1 90 < th dose independent rect. 12 11
844 18.02 humidity 90.0 30 < th dose independent rect. 3 20
863 18.02 precipitation 0.1 90 < th dose dependent rect. 12 11
865 18.03 humidity 70.0 30 < th dose independent rect. 13 1
866 18.03 atmosphere 1005.0 30 > th dose independent rect. 10 1
867 18.03 radiation 20.0 30 > th dose independent rect. 10 1
869 18.03 humidity 50.0 720 > th dose independent rect. 11 2
871 18.03 temperature 10.0 90 > th dose independent rect. 12 11
872 18.03 atmosphere 1015.0 90 < th dose independent rect. 12 11
873 18.03 wind 9.0 90 < th dose independent rect. 23 13
874 18.03 temperature 10.0 90 > th dose independent rect. 23 13
877 18.03 precipitation 0.1 90 < th dose independent rect. 23 13
878 18.03 humidity 70.0 30 < th dose dependent rect. 10 1
884 18.03 precipitation 0.1 90 < th dose dependent rect. 23 13
886 18.04 wind 1.0 720 > th dose independent rect. 11 2
892 18.04 temperature 15.0 720 > th dose independent rect. 3 8
893 18.04 radiation 40.0 720 < th dose independent rect. 15 8
902 18.04 atmosphere 1000.0 30 > th dose dependent rect. 10 1
922 18.05 atmosphere 1015.0 720 < th dose independent rect. 11 2
953 18.06 temperature 30.0 30 < th dose independent rect. 10 1
954 18.06 humidity 60.0 30 > th dose independent rect. 10 1
957 18.06 wind 9.0 720 < th dose independent rect. 11 2
979 18.06 atmosphere 1000.0 720 > th dose independent rect. 23 10
981 18.06 atmosphere 995.0 720 > th dose independent rect. 1 22
983 18.06 wind 5.0 30 < th dose dependent rect. 10 1