Os12g0425500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os12g0425500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.04 | 0.433 | 8.2 | -1.62 | 0.321 | -0.479 | -0.0931 | -4.56 | 0.193 | 21.9 | 25.29 | 77 | -- | -- |
| 91.87 | 0.45 | 8.14 | -1.1 | 0.245 | -0.969 | 0.067 | -- | 0.315 | 21.4 | 25.94 | 36 | -- | -- |
| 85.08 | 0.43 | 8.2 | -1.61 | 0.322 | -0.485 | -- | -4.52 | 0.195 | 21.8 | 25.3 | 77 | -- | -- |
| 91.89 | 0.449 | 8.14 | -1.1 | 0.245 | -0.977 | -- | -- | 0.315 | 21.3 | 25.94 | 36 | -- | -- |
| 89.92 | 0.444 | 8.17 | -1.48 | -- | -0.711 | -- | -3.67 | 0.235 | -- | 25.31 | 29 | -- | -- |
| 105.17 | 0.481 | 8.15 | -1.22 | 0.442 | -- | 0.476 | -- | 0.275 | 0.83 | -- | -- | -- | -- |
| 106.09 | 0.482 | 8.15 | -1.24 | 0.44 | -- | -- | -- | 0.273 | 0.593 | -- | -- | -- | -- |
| 95.33 | 0.457 | 8.13 | -1.09 | -- | -1.01 | -- | -- | 0.32 | -- | 25.8 | 16 | -- | -- |
| 122.56 | 0.518 | 8.11 | -- | 0.26 | -1.24 | -- | -- | 0.445 | 19.6 | 25.94 | 36 | -- | -- |
| 118.25 | 0.508 | 8.14 | -1.22 | -- | -- | -- | -- | 0.28 | -- | -- | -- | -- | -- |
| 146.34 | 0.566 | 8.12 | -- | 0.422 | -- | -- | -- | 0.41 | 0.451 | -- | -- | -- | -- |
| 126.09 | 0.525 | 8.1 | -- | -- | -1.17 | -- | -- | 0.448 | -- | 25.7 | 18 | -- | -- |
| 157.53 | 0.586 | 8.11 | -- | -- | -- | -- | -- | 0.416 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.09 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 2 | 82.20 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 3 | 82.27 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 4 | 82.29 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 13 | 82.53 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 14 | 82.55 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 35 | 83.15 | wind | 5.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 36 | 83.16 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 37 | 83.21 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 43 | 83.43 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 44 | 83.44 | wind | 5.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 48 | 83.54 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 54 | 83.58 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 66 | 83.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 75 | 83.74 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 83 | 83.79 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 8 |
| 121 | 83.99 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 130 | 84.01 | wind | 5.0 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 154 | 84.11 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 162 | 84.14 | temperature | 20.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 163 | 84.14 | temperature | 30.0 | 270 | < th | dose independent | sin | 3 | NA |
| 175 | 84.17 | wind | 5.0 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 186 | 84.21 | wind | 5.0 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 220 | 84.29 | temperature | 20.0 | 14400 | < th | dose independent | sin | 15 | NA |
| 244 | 84.34 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 250 | 84.36 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 281 | 84.42 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 286 | 84.42 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 7 | 20 |
| 304 | 84.46 | wind | 5.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 305 | 84.46 | wind | 9.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 347 | 84.51 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 370 | 84.54 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 18 | 16 |
| 389 | 84.55 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 403 | 84.58 | wind | 5.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 435 | 84.61 | wind | 3.0 | 43200 | > th | dose dependent | sin | 9 | NA |
| 473 | 84.66 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 479 | 84.66 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 7 | 20 |
| 482 | 84.67 | temperature | 30.0 | 270 | > th | dose independent | sin | 3 | NA |
| 541 | 84.72 | wind | 9.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 547 | 84.72 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 20 |
| 637 | 84.81 | temperature | 20.0 | 14400 | > th | dose independent | no | NA | NA |
| 661 | 84.83 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 704 | 84.88 | temperature | 30.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 706 | 84.89 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 716 | 84.90 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 763 | 84.95 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 772 | 84.95 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 773 | 84.96 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 828 | 85.00 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 841 | 85.02 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 870 | 85.04 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 886 | 85.07 | temperature | 20.0 | 14400 | < th | dose independent | no | NA | NA |
| 894 | 85.08 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 903 | 85.08 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 912 | 85.09 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 10 | 15 |
| 914 | 85.09 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 22 |
| 947 | 85.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 972 | 85.15 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 7 | 19 |
| 977 | 85.16 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 995 | 85.18 | temperature | 25.0 | 90 | > th | dose dependent | no | NA | NA |
| 998 | 85.18 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 5 | 10 |