Os12g0424700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os12g0424700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.09 | 0.446 | 9.97 | 1.25 | 0.495 | -1.36 | 0.721 | 0.894 | 0.0814 | 8.12 | 22.1 | 1453 | -- | -- |
| 92 | 0.447 | 10 | 0.989 | 0.508 | -1.37 | 0.725 | -- | 0.00259 | 8.11 | 22.2 | 1461 | -- | -- |
| 91.55 | 0.446 | 9.97 | 1.27 | 0.494 | -1.36 | -- | 0.908 | 0.0795 | 8.43 | 22.1 | 1477 | -- | -- |
| 93.42 | 0.45 | 10 | 0.983 | 0.493 | -1.37 | -- | -- | 0.00836 | 8.47 | 22.2 | 1479 | -- | -- |
| 101.49 | 0.469 | 9.98 | 1.25 | -- | -1.28 | -- | 0.885 | 0.107 | -- | 22.28 | 1033 | -- | -- |
| 160.46 | 0.594 | 10.1 | 0.458 | 0.494 | -- | 0.584 | -- | -0.441 | 8.54 | -- | -- | -- | -- |
| 161.46 | 0.595 | 10.1 | 0.478 | 0.49 | -- | -- | -- | -0.44 | 8.86 | -- | -- | -- | -- |
| 102.79 | 0.472 | 10 | 0.932 | -- | -1.28 | -- | -- | -0.00723 | -- | 22.25 | 976 | -- | -- |
| 115.29 | 0.5 | 10 | -- | 0.491 | -1.11 | -- | -- | -0.15 | 8.24 | 22.4 | 1394 | -- | -- |
| 175.16 | 0.618 | 10.1 | 0.478 | -- | -- | -- | -- | -0.437 | -- | -- | -- | -- | -- |
| 167.48 | 0.605 | 10.1 | -- | 0.491 | -- | -- | -- | -0.494 | 8.79 | -- | -- | -- | -- |
| 122.46 | 0.515 | 10 | -- | -- | -1.09 | -- | -- | -0.142 | -- | 22.3 | 841 | -- | -- |
| 181.19 | 0.628 | 10.1 | -- | -- | -- | -- | -- | -0.49 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 3 | 91.86 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 6 | 91.97 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 9 | 92.05 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 33 | 92.38 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 46 | 92.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 86 | 92.85 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 397 | 95.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 400 | 95.64 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 435 | 95.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 584 | 96.89 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 724 | 97.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 750 | 98.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 802 | 98.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 865 | 99.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 977 | 99.80 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |