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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0424600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF295 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0365) R2 : 0.00524
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.119 (0.0768) R2dN8 : 0.00677 R2N8 : 0.00524
σ : 0.687
deviance : 216.66
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
191.52 0.65 2.93 0.0295 0.165 3.25 -0.534 4.87 -0.0724 13.2 1013 1574 -- --
202.68 0.663 2.91 0.214 0.0475 2.18 -0.533 -- -0.0302 16.8 1013 1544 -- --
192.6 0.646 2.93 0.0133 0.165 3.34 -- 4.92 -0.0726 12.6 1014 1573 -- --
199.66 0.658 2.91 0.144 0.156 1.55 -- -- -0.0503 12.5 1012 1609 -- --
194.32 0.649 2.93 0.0171 -- 3.46 -- 5.05 -0.0766 -- 1014 1575 -- --
213.01 0.684 2.92 0.0456 0.21 -- -0.454 -- -0.11 12.9 -- -- -- --
213.88 0.685 2.93 0.029 0.211 -- -- -- -0.113 12.9 -- -- -- --
201.45 0.661 2.91 0.148 -- 1.66 -- -- -0.0462 -- 1012 1607 -- --
200.21 0.659 2.92 -- 0.168 1.56 -- -- -0.0641 12.4 1012 1608 -- --
216.65 0.688 2.93 0.0212 -- -- -- -- -0.117 -- -- -- -- --
213.9 0.684 2.93 -- 0.21 -- -- -- -0.116 12.9 -- -- -- --
202.01 0.662 2.92 -- -- 1.62 -- -- -0.065 -- 1012 1610 -- --
216.66 0.687 2.93 -- -- -- -- -- -0.119 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 189.95 atmosphere 1015 1440 < th dose independent rect. 7 14
7 190.03 atmosphere 1015 1440 < th dose independent rect. 2 19
10 190.07 atmosphere 1015 1440 < th dose independent rect. 24 21
13 190.54 atmosphere 1015 1440 > th dose independent rect. 10 12
35 190.77 atmosphere 1015 1440 < th dose independent sin 22 NA
36 190.81 atmosphere 1010 720 > th dose dependent rect. 24 9
38 190.90 atmosphere 1010 720 > th dose dependent rect. 23 11
57 191.41 atmosphere 1015 1440 > th dose independent sin 22 NA
95 192.19 atmosphere 1015 1440 > th dose independent rect. 13 8
103 192.23 atmosphere 1010 720 > th dose dependent rect. 24 4
107 192.33 atmosphere 1015 1440 > th dose dependent rect. 10 12
118 192.44 atmosphere 1010 720 > th dose dependent rect. 1 2
127 192.70 atmosphere 1015 1440 < th dose independent rect. 15 5
140 192.82 atmosphere 1015 1440 > th dose dependent rect. 11 10
147 192.90 atmosphere 1015 1440 < th dose independent rect. 19 1
185 193.04 atmosphere 1015 1440 > th dose dependent sin 23 NA
213 193.24 atmosphere 1010 720 > th dose dependent sin 6 NA
225 193.35 atmosphere 1015 1440 > th dose dependent rect. 11 2
236 193.43 atmosphere 1015 1440 > th dose dependent rect. 11 7
241 193.44 atmosphere 1015 1440 > th dose dependent rect. 11 4
369 193.73 atmosphere 1010 720 > th dose dependent rect. 3 1
389 193.84 atmosphere 1010 720 > th dose dependent rect. 6 1
477 194.33 atmosphere 1015 1440 < th dose independent rect. 19 23
500 194.37 atmosphere 1015 1440 < th dose independent no NA NA
507 194.38 atmosphere 1015 1440 < th dose independent rect. 10 23
521 194.41 atmosphere 1015 1440 < th dose independent rect. 16 23
524 194.43 atmosphere 1015 1440 > th dose independent rect. 11 2
551 194.61 atmosphere 1015 1440 > th dose dependent rect. 13 8
632 195.27 atmosphere 1015 1440 < th dose independent rect. 13 23
677 195.66 atmosphere 1015 1440 > th dose independent rect. 13 2
692 195.72 atmosphere 1010 1440 > th dose dependent rect. 10 19
742 195.82 atmosphere 1015 1440 > th dose independent no NA NA
774 195.84 atmosphere 1015 1440 > th dose dependent rect. 14 1
784 195.86 atmosphere 1015 1440 > th dose independent rect. 16 23
967 196.42 atmosphere 1010 1440 > th dose dependent no NA NA
975 196.45 atmosphere 1010 90 > th dose dependent rect. 8 3