Os12g0422800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0422800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.17 | 0.564 | 3.18 | 0.191 | 0.291 | 0.686 | 0.417 | -0.884 | 0.206 | 8.82 | 24.72 | 1550 | -- | -- |
| 145.76 | 0.562 | 3.18 | 0.017 | 0.278 | 0.697 | 0.508 | -- | 0.216 | 8.29 | 24.7 | 1592 | -- | -- |
| 144.71 | 0.56 | 3.18 | 0.197 | 0.284 | 0.681 | -- | -0.861 | 0.201 | 9.17 | 24.73 | 1556 | -- | -- |
| 145.87 | 0.563 | 3.17 | -0.00341 | 0.281 | 0.682 | -- | -- | 0.182 | 9.45 | 24.69 | 1633 | -- | -- |
| 148.59 | 0.568 | 3.2 | 0.132 | -- | 0.705 | -- | -0.629 | 0.151 | -- | 24.9 | 2270 | -- | -- |
| 156.68 | 0.587 | 3.26 | -0.295 | 0.297 | -- | 0.381 | -- | -0.0969 | 8.99 | -- | -- | -- | -- |
| 157.15 | 0.587 | 3.26 | -0.281 | 0.294 | -- | -- | -- | -0.0959 | 9.32 | -- | -- | -- | -- |
| 148.72 | 0.568 | 3.21 | -0.0463 | -- | 0.667 | -- | -- | 0.122 | -- | 24.51 | 2229 | -- | -- |
| 145.67 | 0.562 | 3.19 | -- | 0.256 | 0.679 | -- | -- | 0.158 | 9.63 | 24.6 | 1635 | -- | -- |
| 162.21 | 0.595 | 3.26 | -0.282 | -- | -- | -- | -- | -0.0947 | -- | -- | -- | -- | -- |
| 159.23 | 0.59 | 3.25 | -- | 0.295 | -- | -- | -- | -0.0646 | 9.39 | -- | -- | -- | -- |
| 148.75 | 0.568 | 3.21 | -- | -- | 0.672 | -- | -- | 0.125 | -- | 24.51 | 2228 | -- | -- |
| 164.31 | 0.598 | 3.26 | -- | -- | -- | -- | -- | -0.0634 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.08 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 4 | 142.43 | wind | 7 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 5 | 142.68 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 6 | 142.69 | wind | 7 | 90 | > th | dose independent | rect. | 18 | 1 |
| 7 | 142.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 10 | 142.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 11 | 142.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 14 |
| 12 | 142.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 20 |
| 14 | 142.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 11 |
| 18 | 142.91 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 19 | 142.94 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 27 | 143.09 | wind | 5 | 10 | > th | dose independent | rect. | 20 | 1 |
| 36 | 143.17 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 47 | 143.29 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 19 |
| 49 | 143.30 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 14 |
| 52 | 143.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 10 |
| 61 | 143.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 20 |
| 63 | 143.43 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 13 | 18 |
| 93 | 143.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 12 |
| 108 | 143.64 | radiation | 1 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 138 | 143.75 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 143 | 143.78 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 14 |
| 144 | 143.78 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 145 | 143.78 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 148 | 143.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 13 |
| 151 | 143.80 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 159 | 143.82 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 14 |
| 172 | 143.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 213 | 143.97 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 10 | 16 |
| 234 | 144.02 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 330 | 144.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 334 | 144.18 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 338 | 144.20 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 343 | 144.20 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 374 | 144.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 421 | 144.35 | temperature | 25 | 1440 | < th | dose independent | sin | 15 | NA |
| 454 | 144.41 | temperature | 25 | 1440 | > th | dose independent | sin | 15 | NA |
| 505 | 144.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 533 | 144.52 | temperature | 25 | 1440 | < th | dose independent | rect. | 1 | 20 |
| 534 | 144.52 | temperature | 25 | 1440 | > th | dose independent | rect. | 24 | 21 |
| 586 | 144.59 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 13 | 22 |
| 591 | 144.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 624 | 144.66 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 11 |
| 663 | 144.72 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 675 | 144.74 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 718 | 144.79 | temperature | 25 | 90 | > th | dose independent | rect. | 12 | 23 |
| 772 | 144.84 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 799 | 144.88 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 813 | 144.89 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 853 | 144.93 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 21 |
| 861 | 144.94 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 881 | 144.96 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 886 | 144.96 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 887 | 144.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 5 |
| 902 | 144.97 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 940 | 145.01 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 952 | 145.02 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 11 | 1 |
| 959 | 145.02 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 993 | 145.04 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 23 |