Os12g0422700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0422700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 504.83 | 1.06 | 6.47 | -3.76 | 0.0749 | -1.81 | -1.64 | -3.63 | 0.897 | 15.1 | 26.2 | 4135 | -- | -- |
| 512.03 | 1.05 | 6.39 | -2.89 | 0.0701 | -1.94 | -1.73 | -- | 0.995 | 15 | 27.5 | 4078 | -- | -- |
| 513.48 | 1.06 | 6.47 | -3.71 | 0.0943 | -1.79 | -- | -3.3 | 0.905 | 14.1 | 26.27 | 4159 | -- | -- |
| 520.48 | 1.06 | 6.39 | -2.91 | 0.12 | -1.89 | -- | -- | 0.999 | 13.9 | 27.58 | 4192 | -- | -- |
| 513.94 | 1.06 | 6.47 | -3.7 | -- | -1.83 | -- | -3.28 | 0.91 | -- | 26.28 | 4134 | -- | -- |
| 625.94 | 1.17 | 6.42 | -3.54 | 0.296 | -- | -1.19 | -- | 0.823 | 14.2 | -- | -- | -- | -- |
| 630.76 | 1.18 | 6.43 | -3.58 | 0.3 | -- | -- | -- | 0.815 | 13.1 | -- | -- | -- | -- |
| 520.24 | 1.06 | 6.35 | -2.92 | -- | -2.05 | -- | -- | 1.15 | -- | 26.1 | 4009 | -- | -- |
| 724.82 | 1.25 | 6.39 | -- | 0.0783 | -2.67 | -- | -- | 1.29 | 11.4 | 27.44 | 4274 | -- | -- |
| 636.35 | 1.18 | 6.43 | -3.59 | -- | -- | -- | -- | 0.809 | -- | -- | -- | -- | -- |
| 968.37 | 1.46 | 6.34 | -- | 0.361 | -- | -- | -- | 1.21 | 13.5 | -- | -- | -- | -- |
| 527.35 | 1.07 | 6.09 | -- | -- | -3.1 | -- | -- | 2.33 | -- | 22.42 | 47520 | -- | -- |
| 976.39 | 1.46 | 6.34 | -- | -- | -- | -- | -- | 1.21 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 501.87 | temperature | 25 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 2 | 501.90 | temperature | 25 | 43200 | < th | dose independent | rect. | 22 | 4 |
| 4 | 502.09 | temperature | 25 | 43200 | > th | dose independent | rect. | 22 | 4 |
| 5 | 502.15 | temperature | 25 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 59 | 503.81 | temperature | 25 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 98 | 504.56 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 115 | 505.09 | temperature | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 120 | 505.17 | temperature | 30 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 123 | 505.23 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 3 |
| 159 | 506.22 | temperature | 25 | 43200 | < th | dose independent | sin | 11 | NA |
| 163 | 506.24 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 165 | 506.33 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 173 | 506.44 | temperature | 25 | 43200 | > th | dose independent | sin | 11 | NA |
| 184 | 506.66 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 13 |
| 200 | 506.91 | temperature | 25 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 208 | 507.02 | temperature | 25 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 236 | 507.36 | temperature | 25 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 267 | 507.61 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 276 | 507.68 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 291 | 507.69 | temperature | 30 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 294 | 507.70 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 295 | 507.70 | temperature | 30 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 339 | 507.87 | temperature | 25 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 390 | 508.06 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 4 |
| 400 | 508.13 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 442 | 508.26 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 11 |
| 458 | 508.28 | temperature | 30 | 43200 | < th | dose independent | sin | 4 | NA |
| 461 | 508.28 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 12 |
| 468 | 508.30 | temperature | 30 | 43200 | > th | dose independent | sin | 4 | NA |
| 535 | 508.51 | temperature | 30 | 43200 | > th | dose independent | rect. | 13 | 22 |
| 551 | 508.55 | temperature | 30 | 43200 | < th | dose independent | rect. | 13 | 22 |
| 560 | 508.61 | temperature | 25 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 648 | 508.82 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 9 |
| 652 | 508.84 | temperature | 30 | 43200 | > th | dose independent | no | NA | NA |
| 719 | 508.84 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 21 |
| 749 | 508.85 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 17 |
| 772 | 508.86 | temperature | 30 | 43200 | < th | dose independent | no | NA | NA |
| 790 | 508.86 | temperature | 30 | 43200 | < th | dose independent | rect. | 6 | 18 |
| 800 | 508.86 | temperature | 30 | 43200 | < th | dose independent | rect. | 4 | 21 |
| 817 | 508.86 | temperature | 25 | 43200 | > th | dose dependent | rect. | 6 | 3 |
| 851 | 508.91 | temperature | 30 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 885 | 508.95 | temperature | 25 | 4320 | > th | dose dependent | sin | 6 | NA |
| 991 | 509.14 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 999 | 509.17 | temperature | 25 | 43200 | > th | dose dependent | rect. | 8 | 1 |