Os12g0420400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Photosystem I reaction center subunit XI, chloroplast precursor (PSI- L) (PSI subunit V).
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Os12g0420400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Photosystem I reaction center subunit XI, chloroplast precursor (PSI- L) (PSI subunit V).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.37 | 0.222 | 16.6 | -0.295 | 0.59 | -0.243 | 0.25 | -0.914 | -0.326 | 18.9 | 74 | 4351 | -- | -- |
| 23.51 | 0.226 | 16.6 | -0.29 | 0.594 | -0.304 | 0.304 | -- | -0.366 | 18.9 | 69.87 | 4189 | -- | -- |
| 22.52 | 0.221 | 16.6 | -0.299 | 0.591 | -0.24 | -- | -0.92 | -0.324 | 18.8 | 74 | 4350 | -- | -- |
| 23.53 | 0.226 | 16.6 | -0.302 | 0.599 | -0.388 | -- | -- | -0.343 | 18.8 | 55.93 | 6682 | -- | -- |
| 40.77 | 0.297 | 16.6 | -0.305 | -- | -0.28 | -- | -0.826 | -0.346 | -- | 73.04 | 4329 | -- | -- |
| 25.49 | 0.237 | 16.6 | -0.308 | 0.594 | -- | 0.241 | -- | -0.31 | 18.8 | -- | -- | -- | -- |
| 25.63 | 0.237 | 16.6 | -0.312 | 0.595 | -- | -- | -- | -0.309 | 18.7 | -- | -- | -- | -- |
| 41.72 | 0.301 | 16.6 | -0.299 | -- | -0.338 | -- | -- | -0.381 | -- | 69.22 | 4279 | -- | -- |
| 24.33 | 0.23 | 16.6 | -- | 0.602 | -0.445 | -- | -- | -0.307 | 18.7 | 46.43 | 6355 | -- | -- |
| 44.16 | 0.311 | 16.6 | -0.325 | -- | -- | -- | -- | -0.321 | -- | -- | -- | -- | -- |
| 28.2 | 0.248 | 16.6 | -- | 0.599 | -- | -- | -- | -0.274 | 18.7 | -- | -- | -- | -- |
| 43.02 | 0.305 | 16.6 | -- | -- | -0.487 | -- | -- | -0.336 | -- | 52.47 | 5772 | -- | -- |
| 46.95 | 0.32 | 16.5 | -- | -- | -- | -- | -- | -0.284 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.21 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 2 | 21.28 | humidity | 80 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 6 | 21.37 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 7 | 21.37 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 11 | 21.46 | humidity | 50 | 4320 | > th | dose dependent | rect. | 10 | 2 |
| 49 | 21.63 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 9 |
| 74 | 21.67 | wind | 1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 76 | 21.67 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 82 | 21.68 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 11 |
| 84 | 21.69 | humidity | 70 | 4320 | > th | dose independent | rect. | 7 | 6 |
| 86 | 21.69 | humidity | 70 | 4320 | > th | dose independent | rect. | 4 | 9 |
| 87 | 21.69 | humidity | 70 | 4320 | > th | dose independent | rect. | 2 | 10 |
| 115 | 21.71 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 121 | 21.72 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 7 |
| 129 | 21.74 | humidity | 70 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 180 | 21.78 | humidity | 70 | 4320 | > th | dose independent | sin | 7 | NA |
| 184 | 21.78 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 242 | 21.82 | humidity | 70 | 4320 | < th | dose independent | sin | 8 | NA |
| 243 | 21.82 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 267 | 21.84 | humidity | 70 | 4320 | < th | dose dependent | sin | 7 | NA |
| 277 | 21.85 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 20 |
| 291 | 21.87 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 11 |
| 309 | 21.88 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 13 |
| 359 | 21.92 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 371 | 21.93 | humidity | 70 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 374 | 21.93 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 19 |
| 384 | 21.94 | humidity | 60 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 390 | 21.94 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 9 |
| 392 | 21.94 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 442 | 21.97 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 12 |
| 450 | 21.97 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 15 |
| 455 | 21.97 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 19 |
| 468 | 21.98 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 524 | 21.99 | wind | 1 | 14400 | > th | dose independent | sin | 5 | NA |
| 537 | 21.99 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 554 | 22.00 | wind | 1 | 14400 | < th | dose independent | sin | 5 | NA |
| 567 | 22.00 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 14 |
| 590 | 22.01 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 14 |
| 599 | 22.02 | humidity | 50 | 14400 | > th | dose independent | sin | 10 | NA |
| 655 | 22.04 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 7 |
| 674 | 22.05 | wind | 1 | 14400 | < th | dose dependent | sin | 6 | NA |
| 735 | 22.08 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 21 |
| 791 | 22.11 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 21 |
| 823 | 22.12 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 12 |
| 916 | 22.15 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 4 |
| 955 | 22.16 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 1 |