Os12g0418900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0418900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, uncharacterized transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.13 | 0.523 | 6.12 | -0.121 | 0.673 | -1.15 | -0.418 | -5.48 | -0.665 | 23.8 | 20.06 | 5598 | -- | -- |
| 131.33 | 0.534 | 6.3 | -0.677 | 0.674 | 1.4 | -0.706 | -- | -0.841 | 0.108 | 14.41 | 3282 | -- | -- |
| 124.28 | 0.519 | 6.11 | -0.217 | 0.686 | -1.8 | -- | -7.01 | -0.662 | 23.8 | 18.73 | 5658 | -- | -- |
| 128.34 | 0.528 | 6.25 | -0.0419 | 0.685 | 1.41 | -- | -- | -0.707 | 0.591 | 16.49 | 5734 | -- | -- |
| 152.78 | 0.576 | 6.08 | -0.259 | -- | -2.38 | -- | -8.17 | -0.685 | -- | 18.7 | 5907 | -- | -- |
| 140.43 | 0.556 | 6.28 | -0.529 | 0.673 | -- | -0.392 | -- | -0.805 | 23.8 | -- | -- | -- | -- |
| 141.05 | 0.556 | 6.28 | -0.515 | 0.675 | -- | -- | -- | -0.804 | 23.9 | -- | -- | -- | -- |
| 156.32 | 0.582 | 6.24 | -0.103 | -- | 1.57 | -- | -- | -0.69 | -- | 16.25 | 5878 | -- | -- |
| 127.4 | 0.526 | 6.25 | -- | 0.7 | 1.7 | -- | -- | -0.678 | 23.9 | 16.23 | 6560 | -- | -- |
| 169.74 | 0.609 | 6.26 | -0.494 | -- | -- | -- | -- | -0.795 | -- | -- | -- | -- | -- |
| 148.03 | 0.569 | 6.27 | -- | 0.669 | -- | -- | -- | -0.747 | 23.9 | -- | -- | -- | -- |
| 156.51 | 0.583 | 6.24 | -- | -- | 1.64 | -- | -- | -0.675 | -- | 16.42 | 5934 | -- | -- |
| 176.18 | 0.62 | 6.25 | -- | -- | -- | -- | -- | -0.74 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 2 | 120.68 | temperature | 15 | 270 | > th | dose dependent | sin | 3 | NA |
| 5 | 121.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 13 |
| 10 | 121.28 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 13 | 121.42 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 15 | 121.45 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 17 | 121.67 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 19 | 121.83 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 7 |
| 20 | 121.84 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 22 | 121.90 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 27 | 121.95 | humidity | 50 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 28 | 121.96 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 10 |
| 30 | 121.96 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 72 | 122.07 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 107 | 122.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 119 | 122.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 120 | 122.30 | humidity | 50 | 43200 | > th | dose independent | sin | 6 | NA |
| 128 | 122.30 | humidity | 50 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 134 | 122.32 | humidity | 50 | 43200 | < th | dose independent | sin | 6 | NA |
| 179 | 122.47 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 242 | 122.64 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 13 |
| 251 | 122.66 | humidity | 80 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 255 | 122.67 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 12 |
| 269 | 122.76 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 287 | 122.82 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 292 | 122.83 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 14 | 8 |
| 336 | 122.94 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 13 | 5 |
| 361 | 123.00 | humidity | 50 | 43200 | < th | dose dependent | sin | 6 | NA |
| 366 | 123.01 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 387 | 123.06 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 397 | 123.08 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 439 | 123.16 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 449 | 123.18 | wind | 7 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 478 | 123.24 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 490 | 123.27 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 515 | 123.30 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 22 |
| 520 | 123.31 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 533 | 123.33 | radiation | 30 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 542 | 123.35 | humidity | 50 | 43200 | < th | dose independent | rect. | 4 | 18 |
| 554 | 123.36 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 578 | 123.38 | humidity | 50 | 43200 | < th | dose independent | no | NA | NA |
| 579 | 123.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 607 | 123.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 619 | 123.39 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 631 | 123.40 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 633 | 123.40 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 638 | 123.41 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 699 | 123.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 737 | 123.47 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 788 | 123.52 | humidity | 50 | 43200 | < th | dose dependent | rect. | 12 | 21 |
| 810 | 123.54 | humidity | 90 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 819 | 123.56 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 17 |
| 859 | 123.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 16 |
| 864 | 123.58 | humidity | 50 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 865 | 123.58 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 871 | 123.59 | humidity | 50 | 43200 | > th | dose independent | no | NA | NA |
| 915 | 123.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 11 |
| 921 | 123.60 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 928 | 123.60 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 979 | 123.63 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 6 |