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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0418600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.17 (0.0237) R2 : 4.18e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00218 (0.05) R2dN8 : 5.4e-06 R2N8 : 4.18e-06
σ : 0.447
deviance : 91.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.33 0.439 0.424 -5.7 0.0276 -527 -0.257 -1110 0.0195 0.0878 15 90 -- --
91.57 0.449 3.17 0.00415 0.0526 -0.0582 0.141 -- 0.00204 6.67 15.16 7 -- --
87.47 0.436 0.425 -5.68 0.0614 -527 -- -1110 0.0305 4.29 15 89 -- --
90.01 0.442 3.16 0.0523 0.0417 0.693 -- -- 0.0194 6.59 17.2 14 -- --
87.66 0.436 0.425 -5.68 -- -527 -- -1110 0.0232 -- 15 90 -- --
91.57 0.449 3.17 0.00639 0.0528 -- 0.138 -- 0.0026 6.65 -- -- -- --
91.62 0.448 3.17 0.00827 0.0541 -- -- -- 0.00207 6.14 -- -- -- --
89.83 0.441 3.16 0.0739 -- 0.694 -- -- 0.0239 -- 17.3 159 -- --
89.81 0.441 3.16 -- 0.0557 0.684 -- -- 0.0162 6.07 17.2 159 -- --
91.77 0.448 3.17 0.00979 -- -- -- -- 0.00327 -- -- -- -- --
91.62 0.448 3.17 -- 0.0542 -- -- -- 0.00114 6.13 -- -- -- --
89.96 0.442 3.17 -- -- 0.676 -- -- 0.0108 -- 17.23 159 -- --
91.77 0.447 3.17 -- -- -- -- -- 0.00218 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.71 wind 1.0 90 < th dose independent rect. 1 1
2 85.30 wind 1.0 10 < th dose independent rect. 1 2
3 85.40 wind 3.0 90 < th dose dependent rect. 1 1
4 85.41 humidity 90.0 10 > th dose dependent rect. 1 2
7 85.49 wind 3.0 30 < th dose dependent rect. 24 3
12 85.66 atmosphere 1015.0 1440 < th dose independent rect. 1 3
18 85.98 temperature 15.0 1440 > th dose independent rect. 1 3
28 86.44 radiation 1.0 720 < th dose dependent rect. 6 6
32 86.52 atmosphere 1015.0 720 < th dose independent rect. 1 8
35 86.54 atmosphere 1005.0 90 < th dose dependent rect. 24 1
40 86.63 temperature 10.0 30 > th dose dependent rect. 3 21
42 86.65 radiation 1.0 720 < th dose dependent rect. 23 13
44 86.67 temperature 15.0 30 > th dose dependent rect. 3 17
46 86.68 radiation 1.0 720 < th dose independent rect. 7 3
47 86.68 radiation 1.0 720 < th dose independent rect. 7 5
54 86.72 humidity 90.0 30 > th dose independent rect. 1 2
57 86.73 temperature 15.0 90 > th dose independent rect. 3 21
67 86.84 wind 1.0 720 < th dose dependent rect. 15 1
73 86.87 atmosphere 1005.0 10 < th dose independent rect. 24 2
88 86.89 temperature 15.0 1440 > th dose independent rect. 1 15
91 86.90 atmosphere 1015.0 720 < th dose independent rect. 1 16
93 86.91 wind 7.0 10 < th dose independent rect. 3 21
94 86.91 temperature 20.0 10 < th dose dependent rect. 3 10
95 86.92 atmosphere 1015.0 1440 < th dose independent rect. 16 4
96 86.92 temperature 15.0 720 > th dose independent rect. 5 8
112 86.95 atmosphere 1015.0 1440 < th dose independent rect. 13 7
116 86.97 atmosphere 1015.0 1440 > th dose independent rect. 13 2
119 86.97 radiation 1.0 270 < th dose independent rect. 9 4
126 86.97 radiation 1.0 270 < th dose dependent rect. 9 4
139 86.98 atmosphere 1015.0 1440 > th dose dependent rect. 12 1
162 87.00 atmosphere 1015.0 1440 < th dose independent rect. 12 1
172 87.00 temperature 30.0 10 < th dose dependent rect. 24 14
195 87.03 humidity 90.0 270 > th dose independent rect. 11 2
208 87.03 humidity 90.0 270 > th dose dependent rect. 11 2
223 87.06 wind 1.0 720 < th dose independent rect. 15 1
229 87.07 temperature 15.0 1440 > th dose independent sin 23 NA
230 87.07 radiation 1.0 720 < th dose independent rect. 23 13
242 87.08 humidity 90.0 10 > th dose dependent rect. 8 4
272 87.11 humidity 90.0 10 > th dose independent rect. 8 4
282 87.12 temperature 15.0 1440 > th dose independent rect. 21 7
300 87.13 atmosphere 1015.0 1440 < th dose independent rect. 4 16
306 87.14 temperature 15.0 270 > th dose independent sin 2 NA
308 87.14 atmosphere 1015.0 1440 < th dose independent rect. 9 11
309 87.14 atmosphere 1015.0 1440 < th dose independent rect. 7 13
334 87.17 temperature 20.0 10 < th dose dependent rect. 6 7
346 87.18 wind 1.0 10 < th dose independent rect. 13 14
352 87.18 temperature 15.0 1440 < th dose dependent sin 22 NA
353 87.18 temperature 15.0 1440 < th dose dependent sin 0 NA
365 87.19 temperature 15.0 270 > th dose independent sin 4 NA
366 87.19 temperature 15.0 1440 < th dose independent sin 22 NA
388 87.20 atmosphere 1015.0 720 > th dose independent rect. 24 3
414 87.20 radiation 1.0 720 > th dose independent rect. 18 20
423 87.21 atmosphere 1015.0 1440 < th dose independent sin 22 NA
438 87.21 temperature 15.0 1440 > th dose independent rect. 21 20
439 87.21 atmosphere 1015.0 1440 > th dose dependent sin 20 NA
441 87.21 temperature 20.0 720 < th dose dependent rect. 12 1
442 87.21 atmosphere 1015.0 720 > th dose dependent rect. 24 1
475 87.22 atmosphere 1015.0 1440 > th dose dependent sin 18 NA
502 87.23 atmosphere 1015.0 1440 > th dose independent sin 22 NA
517 87.23 temperature 15.0 4320 < th dose dependent rect. 5 1
560 87.24 temperature 15.0 1440 < th dose independent rect. 5 19
622 87.26 wind 7.0 10 > th dose independent rect. 12 1
624 87.26 temperature 20.0 720 < th dose independent rect. 10 1
632 87.26 temperature 20.0 720 < th dose dependent rect. 10 1
636 87.26 temperature 20.0 270 < th dose dependent rect. 12 6
638 87.26 temperature 15.0 10 > th dose dependent rect. 3 9
646 87.26 temperature 15.0 1440 < th dose dependent rect. 3 19
655 87.27 precipitation 0.1 720 > th dose independent rect. 10 1
660 87.27 temperature 20.0 270 < th dose independent rect. 12 6
671 87.27 wind 7.0 10 > th dose dependent rect. 12 1
676 87.27 precipitation 0.1 720 > th dose dependent rect. 10 1
682 87.27 humidity 90.0 720 > th dose dependent rect. 7 5
684 87.27 temperature 20.0 90 < th dose dependent rect. 6 6
701 87.27 temperature 15.0 1440 < th dose dependent rect. 3 15
752 87.28 temperature 15.0 1440 < th dose dependent rect. 3 9
769 87.29 temperature 15.0 1440 < th dose independent rect. 4 10
792 87.29 wind 7.0 10 < th dose independent rect. 21 23
794 87.29 wind 7.0 270 > th dose dependent rect. 1 7
823 87.30 wind 7.0 270 > th dose independent rect. 1 7
824 87.30 temperature 15.0 1440 < th dose independent rect. 4 8
827 87.30 temperature 20.0 10 < th dose independent rect. 9 9
829 87.30 wind 1.0 10 < th dose independent rect. 17 10
855 87.30 temperature 20.0 10 < th dose dependent rect. 9 9
860 87.30 wind 9.0 720 > th dose dependent rect. 21 13
869 87.31 precipitation 0.1 720 > th dose independent rect. 15 1
881 87.31 precipitation 0.1 720 > th dose dependent rect. 15 1
909 87.32 temperature 20.0 90 < th dose independent rect. 9 2
912 87.32 wind 1.0 10 < th dose independent rect. 21 6
929 87.32 temperature 15.0 4320 < th dose dependent rect. 12 1
932 87.32 temperature 20.0 10 < th dose dependent rect. 9 3
938 87.32 temperature 20.0 10 < th dose dependent rect. 12 6
958 87.33 temperature 15.0 90 > th dose independent no NA NA
960 87.33 temperature 15.0 90 < th dose independent sin 7 NA