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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0417600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0152) R2 : 3.26e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00124 (0.0321) R2dN8 : 4.21e-06 R2N8 : 3.26e-06
σ : 0.287
deviance : 37.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.72 0.277 2.86 -0.151 0.0326 0.498 -0.149 -1.66 0.0108 6.23 0.5 2981 -- --
37.24 0.286 2.84 -0.111 0.0429 -0.0271 -0.17 -- -0.0148 8.37 0.5 2981 -- --
34.77 0.275 2.86 -0.15 0.0326 0.495 -- -1.66 0.0108 6.23 0.4999 2980 -- --
36.67 0.282 2.84 -0.134 0.0518 0.292 -- -- 0.0284 6.13 0.4916 3150 -- --
34.82 0.275 2.87 -0.151 -- 0.499 -- -1.68 0.0111 -- 0.4982 2980 -- --
37.24 0.286 2.84 -0.112 0.0429 -- -0.169 -- -0.0147 8.38 -- -- -- --
37.32 0.286 2.84 -0.116 0.0432 -- -- -- -0.0144 9.1 -- -- -- --
36.65 0.282 2.84 -0.163 -- 0.311 -- -- 0.0271 -- 0.4946 3300 -- --
37.26 0.284 2.84 -- 0.0281 0.21 -- -- 0.0182 5.68 0.4838 3300 -- --
37.43 0.286 2.85 -0.117 -- -- -- -- -0.0142 -- -- -- -- --
37.68 0.287 2.84 -- 0.0432 -- -- -- -0.00144 9.3 -- -- -- --
37.29 0.284 2.84 -- -- 0.217 -- -- 0.018 -- 0.5 3300 -- --
37.79 0.287 2.84 -- -- -- -- -- -0.00124 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.09 humidity 80.0 30 < th dose independent rect. 1 1
11 33.09 humidity 80.0 30 < th dose dependent rect. 1 1
37 34.51 wind 9.0 14400 > th dose independent rect. 1 1
39 34.51 wind 9.0 14400 > th dose dependent rect. 1 1
43 34.64 radiation 10.0 90 < th dose dependent rect. 10 1
49 34.93 temperature 20.0 270 < th dose dependent rect. 8 8
50 34.94 temperature 20.0 270 < th dose independent rect. 9 1
51 34.94 temperature 20.0 720 < th dose dependent rect. 8 2
55 35.00 radiation 10.0 4320 < th dose independent rect. 11 1
64 35.07 temperature 25.0 30 < th dose dependent rect. 10 6
84 35.17 precipitation 0.1 14400 > th dose independent rect. 22 11
85 35.17 precipitation 0.1 14400 < th dose independent rect. 22 11
88 35.17 precipitation 0.1 14400 < th dose dependent rect. 22 11
94 35.20 wind 9.0 14400 > th dose dependent rect. 23 3
99 35.22 precipitation 0.1 14400 > th dose dependent rect. 22 11
103 35.24 wind 7.0 14400 > th dose dependent rect. 23 1
106 35.25 wind 9.0 14400 > th dose independent rect. 23 3
109 35.25 humidity 90.0 14400 > th dose dependent rect. 12 1
111 35.26 wind 7.0 14400 > th dose independent rect. 23 1
115 35.26 humidity 90.0 10 < th dose dependent rect. 22 7
121 35.29 humidity 90.0 10 < th dose dependent rect. 22 5
122 35.30 wind 7.0 14400 < th dose independent rect. 23 1
123 35.30 precipitation 0.1 14400 > th dose independent rect. 19 15
124 35.30 precipitation 0.1 14400 < th dose independent rect. 19 15
126 35.30 precipitation 0.1 14400 < th dose dependent rect. 19 15
127 35.31 atmosphere 1005.0 30 > th dose dependent rect. 1 1
132 35.34 radiation 10.0 4320 < th dose dependent rect. 10 2
152 35.39 precipitation 0.1 14400 > th dose independent sin 8 NA
153 35.39 precipitation 0.1 14400 < th dose independent sin 8 NA
154 35.39 precipitation 0.1 14400 < th dose dependent sin 8 NA
155 35.40 temperature 20.0 90 < th dose independent rect. 1 1
163 35.41 precipitation 0.1 14400 > th dose independent rect. 22 16
170 35.42 precipitation 0.1 14400 < th dose independent rect. 22 16
174 35.42 precipitation 0.1 14400 < th dose dependent rect. 22 16
179 35.43 precipitation 0.1 14400 > th dose independent rect. 23 5
189 35.44 precipitation 0.1 14400 > th dose dependent rect. 23 5
196 35.44 precipitation 0.1 14400 > th dose dependent rect. 22 16
199 35.45 radiation 30.0 30 < th dose independent rect. 11 2
200 35.45 precipitation 0.1 14400 < th dose independent rect. 23 5
205 35.45 precipitation 0.1 14400 < th dose dependent rect. 23 5
207 35.45 precipitation 0.1 14400 > th dose dependent rect. 19 15
211 35.46 atmosphere 1015.0 1440 > th dose independent rect. 14 1
217 35.46 atmosphere 1015.0 1440 > th dose dependent rect. 14 1
230 35.47 atmosphere 1015.0 1440 < th dose independent rect. 14 1
232 35.47 atmosphere 1015.0 1440 < th dose independent rect. 14 5
233 35.47 precipitation 0.1 14400 > th dose independent rect. 22 7
239 35.47 temperature 25.0 90 < th dose dependent rect. 24 16
240 35.48 humidity 90.0 14400 > th dose independent rect. 12 1
243 35.48 precipitation 0.1 14400 > th dose independent rect. 23 2
249 35.48 precipitation 0.1 14400 < th dose independent rect. 22 7
252 35.48 precipitation 0.1 14400 > th dose dependent sin 8 NA
253 35.48 precipitation 0.1 14400 > th dose dependent rect. 23 2
255 35.48 precipitation 0.1 14400 < th dose dependent rect. 22 7
290 35.51 precipitation 0.1 14400 < th dose independent rect. 23 2
298 35.51 precipitation 0.1 14400 < th dose dependent rect. 23 2
304 35.51 temperature 25.0 10 < th dose dependent rect. 24 17
310 35.52 precipitation 0.1 4320 < th dose independent rect. 6 6
315 35.52 precipitation 0.1 14400 < th dose independent rect. 17 17
319 35.52 precipitation 0.1 4320 < th dose dependent rect. 6 6
322 35.52 precipitation 0.1 14400 < th dose dependent rect. 17 17
327 35.53 precipitation 0.1 14400 > th dose independent rect. 17 17
333 35.54 precipitation 0.1 4320 > th dose independent rect. 12 1
341 35.54 precipitation 0.1 4320 > th dose dependent rect. 12 1
350 35.55 precipitation 0.1 4320 < th dose independent rect. 9 3
358 35.55 precipitation 0.1 4320 < th dose dependent rect. 9 3
370 35.56 humidity 80.0 1440 > th dose independent rect. 1 1
372 35.56 precipitation 0.1 14400 > th dose independent rect. 2 2
374 35.56 precipitation 0.1 4320 > th dose independent rect. 9 3
375 35.56 precipitation 0.1 4320 < th dose independent rect. 6 3
378 35.56 precipitation 0.1 4320 > th dose independent rect. 6 6
387 35.56 precipitation 0.1 14400 > th dose independent rect. 19 19
389 35.56 precipitation 0.1 4320 > th dose dependent rect. 9 3
390 35.56 precipitation 0.1 4320 < th dose dependent rect. 6 3
393 35.56 precipitation 0.1 4320 > th dose dependent rect. 6 6
401 35.57 precipitation 0.1 4320 > th dose independent rect. 10 1
410 35.57 precipitation 0.1 14400 < th dose independent rect. 19 19
411 35.57 precipitation 0.1 4320 > th dose dependent rect. 10 1
419 35.57 precipitation 0.1 14400 < th dose dependent rect. 19 19
420 35.58 humidity 80.0 720 < th dose independent rect. 1 1
424 35.58 atmosphere 1000.0 14400 > th dose independent rect. 3 2
433 35.58 temperature 25.0 270 < th dose dependent rect. 11 1
434 35.58 humidity 80.0 720 < th dose dependent rect. 1 1
477 35.59 temperature 25.0 90 < th dose dependent rect. 24 12
482 35.60 atmosphere 1000.0 14400 < th dose independent rect. 3 2
506 35.61 precipitation 0.1 4320 > th dose independent rect. 6 3
516 35.61 precipitation 0.1 4320 > th dose dependent rect. 6 3
530 35.62 humidity 80.0 14400 < th dose independent rect. 8 2
551 35.63 precipitation 0.1 4320 < th dose independent rect. 12 1
557 35.63 atmosphere 1015.0 1440 < th dose independent rect. 16 4
561 35.63 precipitation 0.1 4320 < th dose dependent rect. 12 1
576 35.64 precipitation 0.1 14400 < th dose independent rect. 2 2
578 35.64 humidity 80.0 14400 < th dose independent rect. 7 4
581 35.64 atmosphere 1000.0 14400 > th dose independent rect. 21 10
582 35.64 atmosphere 1000.0 14400 < th dose independent rect. 21 10
593 35.64 precipitation 0.1 14400 < th dose dependent rect. 2 2
599 35.64 temperature 25.0 10 < th dose dependent rect. 24 13
605 35.65 radiation 10.0 4320 > th dose independent rect. 11 1
611 35.65 atmosphere 1000.0 14400 > th dose independent rect. 23 7
612 35.65 atmosphere 1000.0 14400 < th dose independent rect. 23 7
630 35.65 temperature 25.0 10 < th dose dependent rect. 12 1
632 35.65 humidity 90.0 4320 > th dose dependent rect. 19 1
634 35.65 precipitation 0.1 14400 > th dose dependent rect. 2 2
645 35.65 precipitation 0.1 14400 > th dose dependent rect. 17 17
679 35.66 precipitation 0.1 14400 < th dose independent rect. 22 20
692 35.66 precipitation 0.1 14400 < th dose dependent rect. 22 20
694 35.67 humidity 80.0 14400 > th dose independent rect. 8 2
698 35.67 temperature 20.0 270 < th dose independent rect. 8 7
744 35.68 atmosphere 1000.0 14400 < th dose independent sin 9 NA
767 35.68 radiation 10.0 4320 < th dose dependent rect. 15 1
783 35.68 precipitation 0.1 14400 > th dose dependent rect. 19 19
786 35.69 atmosphere 1000.0 14400 > th dose independent sin 9 NA
812 35.69 precipitation 0.1 14400 > th dose independent rect. 23 22
813 35.69 precipitation 0.1 14400 < th dose independent rect. 23 22
827 35.69 precipitation 0.1 14400 < th dose dependent rect. 23 22
834 35.70 precipitation 0.1 4320 > th dose independent rect. 21 1
835 35.70 precipitation 0.1 4320 < th dose independent rect. 21 1
850 35.70 atmosphere 1015.0 720 < th dose independent rect. 2 15
865 35.70 wind 1.0 4320 < th dose dependent rect. 19 1
867 35.70 precipitation 0.1 4320 < th dose dependent rect. 21 1
895 35.71 humidity 90.0 14400 < th dose independent rect. 12 1
905 35.71 humidity 60.0 30 > th dose independent rect. 2 9
933 35.71 precipitation 0.1 4320 > th dose dependent rect. 21 1
963 35.72 temperature 15.0 4320 > th dose independent rect. 13 3
967 35.72 humidity 80.0 14400 > th dose independent rect. 6 5
1000 35.73 wind 1.0 43200 > th dose independent rect. 8 1