Os12g0417100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os12g0417100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.95 | 0.308 | 9.87 | 0.563 | 1.01 | 0.831 | -1.07 | 0.0446 | -0.462 | 20.5 | 20.8 | 11 | -- | -- |
| 42.89 | 0.307 | 9.87 | 0.563 | 1 | 0.792 | -1.07 | -- | -0.458 | 20.5 | 21.11 | 10 | -- | -- |
| 46.45 | 0.32 | 9.87 | 0.619 | 1.01 | 0.826 | -- | -0.216 | -0.455 | 20.4 | 20.8 | 11 | -- | -- |
| 46.48 | 0.32 | 9.87 | 0.61 | 1.01 | 0.886 | -- | -- | -0.456 | 20.4 | 20.8 | 10 | -- | -- |
| 101.29 | 0.471 | 9.82 | 0.679 | -- | 0.9 | -- | -0.311 | -0.408 | -- | 22.97 | 10 | -- | -- |
| 48.12 | 0.325 | 9.88 | 0.426 | 1.03 | -- | -1.15 | -- | -0.525 | 20.8 | -- | -- | -- | -- |
| 52.52 | 0.339 | 9.88 | 0.465 | 1.04 | -- | -- | -- | -0.524 | 20.7 | -- | -- | -- | -- |
| 101.43 | 0.471 | 9.83 | 0.646 | -- | 0.941 | -- | -- | -0.414 | -- | 22.97 | 10 | -- | -- |
| 55.43 | 0.349 | 9.89 | -- | 1.02 | 0.543 | -- | -- | -0.539 | 20.5 | 21.2 | 13 | -- | -- |
| 113.47 | 0.498 | 9.86 | 0.462 | -- | -- | -- | -- | -0.533 | -- | -- | -- | -- | -- |
| 58.21 | 0.357 | 9.9 | -- | 1.04 | -- | -- | -- | -0.576 | 20.7 | -- | -- | -- | -- |
| 111.63 | 0.494 | 9.85 | -- | -- | 0.74 | -- | -- | -0.513 | -- | 22.6 | 10 | -- | -- |
| 119.11 | 0.509 | 9.87 | -- | -- | -- | -- | -- | -0.584 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.91 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 14 |
| 2 | 40.21 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 10 |
| 10 | 41.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 12 |
| 14 | 41.09 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 47 | 41.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 48 | 41.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 12 |
| 61 | 41.49 | temperature | 15 | 10 | > th | dose dependent | rect. | 18 | 14 |
| 62 | 41.50 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 63 | 41.51 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 69 | 41.58 | temperature | 25 | 10 | < th | dose dependent | sin | 13 | NA |
| 99 | 41.70 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 131 | 41.78 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 4 | 19 |
| 141 | 41.83 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 14 |
| 200 | 42.00 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 12 |
| 215 | 42.07 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 24 | 22 |
| 234 | 42.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 248 | 42.16 | temperature | 10 | 10 | > th | dose dependent | sin | 12 | NA |
| 249 | 42.16 | humidity | 90 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 256 | 42.19 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 265 | 42.22 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 4 | 19 |
| 277 | 42.25 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 294 | 42.29 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 1 | 20 |
| 311 | 42.32 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 328 | 42.37 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 332 | 42.38 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 13 |
| 337 | 42.39 | temperature | 20 | 10 | < th | dose independent | sin | 11 | NA |
| 341 | 42.40 | temperature | 20 | 10 | > th | dose independent | sin | 11 | NA |
| 350 | 42.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 375 | 42.45 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 395 | 42.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 5 |
| 402 | 42.48 | humidity | 60 | 720 | < th | dose independent | rect. | 18 | 1 |
| 418 | 42.48 | humidity | 60 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 495 | 42.60 | temperature | 25 | 90 | > th | dose dependent | sin | 5 | NA |
| 563 | 42.66 | wind | 5 | 4320 | > th | dose dependent | rect. | 14 | 2 |
| 571 | 42.67 | temperature | 20 | 30 | > th | dose independent | rect. | 4 | 4 |
| 574 | 42.67 | temperature | 15 | 90 | > th | dose independent | rect. | 5 | 23 |
| 649 | 42.77 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 3 |
| 663 | 42.78 | wind | 7 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 672 | 42.79 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 8 |
| 676 | 42.80 | wind | 7 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 700 | 42.82 | humidity | 60 | 30 | > th | dose dependent | rect. | 4 | 8 |
| 709 | 42.83 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 719 | 42.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 4 |
| 727 | 42.85 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 739 | 42.86 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 772 | 42.91 | humidity | 90 | 270 | > th | dose independent | rect. | 2 | 10 |
| 826 | 42.95 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 1 |
| 830 | 42.95 | temperature | 20 | 10 | < th | dose dependent | sin | 8 | NA |
| 833 | 42.96 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 9 |
| 841 | 42.97 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 8 |
| 850 | 42.98 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 19 |
| 853 | 42.98 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 857 | 42.98 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 867 | 42.99 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 876 | 43.00 | humidity | 60 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 898 | 43.01 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 9 |
| 913 | 43.02 | humidity | 90 | 270 | > th | dose independent | rect. | 2 | 15 |
| 946 | 43.04 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 957 | 43.05 | humidity | 90 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 958 | 43.05 | temperature | 20 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 976 | 43.07 | humidity | 60 | 4320 | < th | dose independent | rect. | 18 | 2 |