Os12g0410200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os12g0410200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 420.1 | 0.963 | 9.6 | 0.528 | 5.06 | -2.52 | -0.408 | -3.26 | 1.09 | 17.7 | 5.172 | 74 | 3.17 | 2.82 |
| 427.52 | 0.963 | 9.57 | 0.745 | 5.11 | -2.65 | 0.355 | -- | 1.12 | 17.7 | 4.317 | 73 | 3.3 | 2.72 |
| 417.89 | 0.952 | 9.57 | 0.611 | 5.09 | -2.68 | -- | -3.01 | 1.14 | 17.7 | 4.69 | 73 | 3.33 | 2.58 |
| 426.34 | 0.962 | 9.59 | 0.676 | 5.08 | -2.87 | -- | -- | 1.08 | 17.7 | 4.517 | 71 | 3.3 | 2.53 |
| 1142.7 | 1.57 | 9.45 | 0.661 | -- | -5.18 | -- | -3.64 | 1.39 | -- | 9.926 | 51 | 3.33 | 4.35 |
| 586.32 | 1.14 | 9.57 | 0.512 | 6.33 | -- | 1.94 | -- | 1.25 | 17.6 | -- | -- | -- | -- |
| 595.53 | 1.14 | 9.57 | 0.504 | 6.34 | -- | -- | -- | 1.25 | 17.6 | -- | -- | -- | -- |
| 1151.95 | 1.58 | 9.45 | 0.775 | -- | -5.2 | -- | -- | 1.24 | -- | 10.17 | 47 | 3.32 | 4.45 |
| 438.23 | 0.975 | 9.6 | -- | 5.13 | -2.87 | -- | -- | 1.03 | 17.7 | 4.482 | 70 | 3.35 | 2.5 |
| 2683.28 | 2.42 | 9.47 | 0.299 | -- | -- | -- | -- | 1.1 | -- | -- | -- | -- | -- |
| 602.22 | 1.15 | 9.58 | -- | 6.33 | -- | -- | -- | 1.2 | 17.6 | -- | -- | -- | -- |
| 876.88 | 1.38 | 9.33 | -- | -- | -5.14 | -- | -- | 1.01 | -- | 47.14 | 313 | 0.0143 | 7.18 |
| 2685.63 | 2.42 | 9.48 | -- | -- | -- | -- | -- | 1.07 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 424.88 | wind | 5.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 6 | 436.07 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 8 | 438.29 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 3 |
| 9 | 438.29 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 10 | 438.36 | wind | 3.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 11 | 438.91 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 2 |
| 14 | 439.31 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 15 | 439.38 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 28 | 442.30 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 6 | 21 |
| 30 | 442.51 | wind | 5.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 34 | 443.08 | temperature | 15.0 | 10 | > th | dose independent | rect. | 6 | 22 |
| 36 | 443.23 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 2 |
| 37 | 443.23 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 41 | 443.53 | radiation | 10.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 44 | 443.56 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 46 | 443.56 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 47 | 443.56 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 50 | 443.56 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 51 | 443.56 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 53 | 443.56 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 63 | 444.05 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 65 | 444.05 | temperature | 30.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 66 | 444.05 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 69 | 444.05 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 70 | 444.05 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 77 | 444.06 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 94 | 444.48 | wind | 9.0 | 30 | < th | dose independent | rect. | 6 | 22 |
| 108 | 446.47 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 115 | 447.35 | wind | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 119 | 447.64 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 21 |
| 120 | 447.64 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 21 |
| 133 | 449.60 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 140 | 450.60 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 148 | 451.28 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 153 | 451.79 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 6 | 21 |
| 200 | 454.05 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 258 | 456.46 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 284 | 457.86 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 285 | 457.92 | wind | 9.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 286 | 457.92 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 289 | 457.92 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 293 | 457.92 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 298 | 457.92 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 299 | 457.92 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 300 | 457.92 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 304 | 457.92 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 21 |
| 309 | 458.15 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 6 | 22 |
| 389 | 463.69 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 21 |
| 433 | 465.41 | radiation | 40.0 | 90 | < th | dose independent | rect. | 6 | 21 |
| 440 | 466.16 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 4 | 2 |
| 478 | 467.13 | radiation | 20.0 | 10 | < th | dose independent | rect. | 6 | 21 |
| 482 | 467.34 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 4 | 2 |
| 530 | 468.37 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 548 | 468.58 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 552 | 468.91 | wind | 1.0 | 90 | > th | dose independent | rect. | 6 | 21 |
| 561 | 469.09 | wind | 3.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 585 | 469.61 | wind | 3.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 607 | 470.22 | wind | 3.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 617 | 470.89 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 628 | 471.39 | wind | 3.0 | 90 | < th | dose dependent | rect. | 3 | 17 |
| 684 | 473.71 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 9 |
| 701 | 474.27 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 717 | 474.46 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 14 |
| 724 | 474.54 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 12 |
| 728 | 474.73 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 1 |
| 745 | 475.21 | humidity | 50.0 | 10 | > th | dose independent | rect. | 6 | 21 |
| 810 | 477.17 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 818 | 477.53 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 3 |
| 867 | 478.29 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 873 | 478.35 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 894 | 478.73 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 23 |
| 924 | 479.40 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 3 |
| 984 | 481.22 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 1 |