Os12g0409600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0409600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.35 | 0.35 | 8.29 | -1.27 | 0.438 | 2.54 | -0.00611 | -1.4 | -0.473 | 4.74 | 10.36 | 1361 | -- | -- |
| 56.24 | 0.349 | 8.25 | -1.03 | 0.691 | 2.54 | 0.0629 | -- | -0.418 | 5.18 | 6.075 | 1975 | -- | -- |
| 55.35 | 0.347 | 8.29 | -1.27 | 0.437 | 2.54 | -- | -1.41 | -0.473 | 4.75 | 10.38 | 1358 | -- | -- |
| 56.2 | 0.349 | 8.24 | -1.01 | 0.703 | 2.53 | -- | -- | -0.409 | 5.22 | 7.058 | 1973 | -- | -- |
| 64.32 | 0.374 | 8.29 | -1.27 | -- | 2.66 | -- | -1.42 | -0.475 | -- | 11.04 | 1277 | -- | -- |
| 165.23 | 0.603 | 8.14 | -0.166 | 0.6 | -- | -0.00287 | -- | 0.0693 | 4.07 | -- | -- | -- | -- |
| 165.23 | 0.602 | 8.14 | -0.166 | 0.6 | -- | -- | -- | 0.0693 | 4.07 | -- | -- | -- | -- |
| 66.01 | 0.378 | 8.25 | -0.96 | -- | 2.64 | -- | -- | -0.394 | -- | 10.45 | 1288 | -- | -- |
| 78.37 | 0.412 | 8.21 | -- | 0.484 | 2.1 | -- | -- | -0.224 | 4.04 | 14.87 | 1403 | -- | -- |
| 184.81 | 0.635 | 8.14 | -0.141 | -- | -- | -- | -- | 0.0853 | -- | -- | -- | -- | -- |
| 165.96 | 0.603 | 8.14 | -- | 0.597 | -- | -- | -- | 0.0878 | 4.08 | -- | -- | -- | -- |
| 87.08 | 0.435 | 8.21 | -- | -- | 2.22 | -- | -- | -0.221 | -- | 14.9 | 1264 | -- | -- |
| 185.34 | 0.635 | 8.14 | -- | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 23 | 54.11 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 18 |
| 53 | 54.43 | temperature | 10 | 1440 | > th | dose dependent | sin | 12 | NA |
| 87 | 54.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 123 | 54.85 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 144 | 54.90 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 157 | 54.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 215 | 55.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 5 |
| 318 | 55.47 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 449 | 55.89 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 463 | 55.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 504 | 56.07 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 23 |