Os12g0408800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0408800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.04 | 0.336 | 7.14 | 0.179 | 0.169 | -0.223 | -0.578 | -0.949 | -0.155 | 12.4 | 24.52 | 214 | -- | -- |
| 54 | 0.342 | 7.18 | -0.133 | 0.152 | -0.296 | -0.496 | -- | -0.276 | 10.2 | 24.5 | 211 | -- | -- |
| 52.37 | 0.337 | 7.14 | 0.139 | 0.182 | -0.223 | -- | -0.846 | -0.152 | 12.2 | 24.5 | 243 | -- | -- |
| 54.54 | 0.344 | 7.17 | -0.144 | 0.166 | -0.274 | -- | -- | -0.264 | 12 | 24.6 | 212 | -- | -- |
| 54.11 | 0.343 | 7.15 | 0.0817 | -- | -0.267 | -- | -0.756 | -0.199 | -- | 24.6 | 203 | -- | -- |
| 58.56 | 0.359 | 7.14 | -0.0478 | 0.269 | -- | -0.212 | -- | -0.117 | 13.9 | -- | -- | -- | -- |
| 58.72 | 0.359 | 7.14 | -0.054 | 0.271 | -- | -- | -- | -0.118 | 14.2 | -- | -- | -- | -- |
| 56.12 | 0.349 | 7.18 | -0.153 | -- | -0.303 | -- | -- | -0.285 | -- | 24.57 | 181 | -- | -- |
| 55.04 | 0.346 | 7.16 | -- | 0.174 | -0.253 | -- | -- | -0.238 | 12.2 | 24.53 | 212 | -- | -- |
| 63.11 | 0.371 | 7.14 | -0.0654 | -- | -- | -- | -- | -0.125 | -- | -- | -- | -- | -- |
| 58.79 | 0.359 | 7.14 | -- | 0.272 | -- | -- | -- | -0.112 | 14.2 | -- | -- | -- | -- |
| 56.71 | 0.351 | 7.17 | -- | -- | -0.287 | -- | -- | -0.261 | -- | 24.58 | 172 | -- | -- |
| 63.22 | 0.371 | 7.14 | -- | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.12 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 2 | 49.50 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 3 | 49.73 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 4 | 49.74 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 6 | 49.97 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 12 | 50.07 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 13 | 50.08 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 15 | 50.11 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 33 | 50.23 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 63 | 50.41 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 78 | 50.52 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 79 | 50.52 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 97 | 50.59 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 21 |
| 127 | 50.70 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 148 | 50.75 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 15 |
| 166 | 50.79 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 170 | 50.80 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 192 | 50.85 | wind | 3.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 204 | 50.87 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 208 | 50.88 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 236 | 50.95 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 243 | 50.98 | wind | 3.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 266 | 51.03 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 21 |
| 270 | 51.05 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 274 | 51.05 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 276 | 51.06 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 19 |
| 283 | 51.09 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 284 | 51.09 | wind | 3.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 293 | 51.10 | wind | 9.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 305 | 51.11 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 21 | 18 |
| 313 | 51.13 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 15 |
| 332 | 51.16 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 21 | 6 |
| 372 | 51.24 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 21 |
| 384 | 51.26 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 388 | 51.28 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 396 | 51.30 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 400 | 51.30 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 404 | 51.31 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 7 |
| 428 | 51.34 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 430 | 51.35 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 433 | 51.35 | temperature | 30.0 | 90 | < th | dose dependent | sin | 4 | NA |
| 434 | 51.35 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 437 | 51.35 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 439 | 51.36 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 457 | 51.38 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 463 | 51.40 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 471 | 51.41 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 489 | 51.43 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 490 | 51.44 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 3 |
| 500 | 51.45 | temperature | 10.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 501 | 51.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 544 | 51.50 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 545 | 51.51 | temperature | 25.0 | 270 | < th | dose independent | sin | 7 | NA |
| 556 | 51.52 | wind | 3.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 568 | 51.52 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 578 | 51.53 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 581 | 51.54 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 11 |
| 591 | 51.55 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 606 | 51.57 | wind | 5.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 615 | 51.59 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 643 | 51.62 | temperature | 10.0 | 10 | > th | dose dependent | sin | 2 | NA |
| 657 | 51.63 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 721 | 51.69 | temperature | 25.0 | 270 | < th | dose independent | rect. | 9 | 22 |
| 728 | 51.70 | wind | 3.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 729 | 51.70 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 739 | 51.70 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 759 | 51.73 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 796 | 51.76 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 17 | 15 |
| 814 | 51.78 | wind | 3.0 | 1440 | < th | dose independent | rect. | 7 | 6 |
| 818 | 51.78 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 820 | 51.79 | wind | 3.0 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 833 | 51.80 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 19 |
| 847 | 51.81 | wind | 3.0 | 1440 | > th | dose independent | rect. | 7 | 6 |
| 862 | 51.82 | temperature | 25.0 | 270 | < th | dose dependent | sin | 10 | NA |
| 886 | 51.84 | temperature | 25.0 | 270 | > th | dose independent | rect. | 18 | 21 |
| 895 | 51.85 | wind | 3.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 926 | 51.87 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 931 | 51.88 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 967 | 51.92 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 969 | 51.92 | wind | 3.0 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 971 | 51.92 | temperature | 30.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 972 | 51.92 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 998 | 51.93 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 11 | 23 |