Os12g0408100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0408100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.08 | 0.54 | 6.39 | -0.527 | 0.867 | -1.26 | 2.36 | 2.77 | 0.0846 | 1.97 | 21.62 | 365 | -- | -- |
| 136.25 | 0.544 | 6.47 | -1.03 | 0.787 | -1.05 | 2.14 | -- | -0.101 | 2.12 | 23.24 | 250 | -- | -- |
| 148.37 | 0.572 | 6.48 | -1.42 | 0.78 | -1.07 | -- | -1.76 | -0.153 | 3.52 | 21.62 | 365 | -- | -- |
| 150.01 | 0.57 | 6.48 | -1.19 | 0.801 | -1.13 | -- | -- | -0.193 | 2.15 | 25 | 239 | -- | -- |
| 167.64 | 0.603 | 6.45 | -0.945 | -- | -1.98 | -- | 0.481 | -0.0356 | -- | 24.41 | 105 | -- | -- |
| 157.64 | 0.589 | 6.48 | -1.32 | 1.19 | -- | 2.23 | -- | -0.247 | 2.93 | -- | -- | -- | -- |
| 174.09 | 0.618 | 6.49 | -1.37 | 1.21 | -- | -- | -- | -0.261 | 3.17 | -- | -- | -- | -- |
| 166.11 | 0.6 | 6.44 | -1.02 | -- | -1.87 | -- | -- | -0.0268 | -- | 24.1 | 58 | -- | -- |
| 179.98 | 0.625 | 6.45 | -- | 0.66 | -1.47 | -- | -- | 0.0476 | 3.35 | 21.74 | 82 | -- | -- |
| 257.19 | 0.749 | 6.49 | -1.32 | -- | -- | -- | -- | -0.23 | -- | -- | -- | -- | -- |
| 223.33 | 0.699 | 6.46 | -- | 1.18 | -- | -- | -- | -0.109 | 3.17 | -- | -- | -- | -- |
| 191.38 | 0.644 | 6.4 | -- | -- | -2.03 | -- | -- | 0.17 | -- | 22.64 | 73 | -- | -- |
| 302.83 | 0.812 | 6.45 | -- | -- | -- | -- | -- | -0.0836 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 127.57 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 16 |
| 14 | 129.06 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 28 | 129.68 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 33 | 130.08 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 36 | 130.10 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 37 | 130.21 | temperature | 20.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 38 | 130.26 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 77 | 131.20 | temperature | 20.0 | 270 | > th | dose dependent | sin | 23 | NA |
| 79 | 131.23 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 2 | 13 |
| 97 | 131.50 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 130 | 131.95 | temperature | 30.0 | 720 | < th | dose dependent | sin | 4 | NA |
| 141 | 132.04 | wind | 1.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 180 | 132.37 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 14 |
| 182 | 132.37 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 14 |
| 188 | 132.44 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 14 |
| 299 | 133.19 | temperature | 20.0 | 270 | > th | dose dependent | no | NA | NA |
| 311 | 133.28 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 354 | 133.45 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 10 | 9 |
| 355 | 133.45 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 10 | 9 |
| 357 | 133.46 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 6 |
| 358 | 133.46 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 6 |
| 360 | 133.48 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 10 | 9 |
| 404 | 133.65 | wind | 1.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 424 | 133.75 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 12 | 7 |
| 461 | 133.93 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 24 | 19 |
| 468 | 133.95 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 484 | 134.00 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 24 | 19 |
| 485 | 134.00 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 24 | 19 |
| 489 | 134.03 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 24 | 19 |
| 513 | 134.09 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 1 | NA |
| 517 | 134.10 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 599 | 134.39 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 16 |
| 605 | 134.41 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 635 | 134.57 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 664 | 134.66 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 687 | 134.73 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 719 | 134.85 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 728 | 134.87 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 23 |
| 742 | 134.92 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 743 | 134.92 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 760 | 134.96 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 1 | NA |
| 768 | 134.98 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 1 | NA |
| 770 | 134.98 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 1 | NA |
| 794 | 135.06 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 822 | 135.12 | temperature | 30.0 | 270 | < th | dose dependent | sin | 23 | NA |
| 836 | 135.15 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 15 |
| 894 | 135.28 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 955 | 135.43 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 9 |
| 996 | 135.52 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 14 |