FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0408000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF594 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.6 (0.0458) R2 : 0.541
β1 : -2.03 (0.173) R2dD : 0.155 R2D : 0.023
β2 : 1.82 (0.116) R2dC : 0.251 R2C : 0.22
β3 : 2.07 (0.136) R2dE : 0.253 R2E : 0.122
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.641 (0.0984) R2dN8 : 0.0588 R2N8 : -0.0112
σ : 0.853
deviance : 335.29
__
_____
C
peak time of C : 7.99
E
wheather : temperature
threshold : 25.3
memory length : 1290
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
334.47 0.859 4.6 -1.95 1.82 2.05 -0.513 0.28 -0.626 8.03 25.3 1288 -- --
334.5 0.852 4.6 -2.02 1.82 2.07 -0.512 -- -0.643 8.02 25.3 1292 -- --
335.24 0.853 4.59 -1.94 1.83 2.04 -- 0.367 -0.62 7.99 25.3 1287 -- --
335.29 0.853 4.6 -2.03 1.82 2.07 -- -- -0.641 7.99 25.3 1290 -- --
510.11 1.05 4.65 -1.88 -- 1.99 -- 0.592 -0.65 -- 24.64 1374 -- --
499.43 1.05 4.56 -1.36 1.84 -- -0.199 -- -0.433 7.31 -- -- -- --
499.53 1.05 4.56 -1.37 1.84 -- -- -- -0.433 7.29 -- -- -- --
510.32 1.05 4.67 -2.05 -- 2.05 -- -- -0.696 -- 24.6 1372 -- --
435.3 0.972 4.52 -- 1.79 1.54 -- -- -0.199 7.86 27.19 1295 -- --
678.33 1.22 4.6 -1.33 -- -- -- -- -0.402 -- -- -- -- --
548.73 1.1 4.53 -- 1.82 -- -- -- -0.281 7.34 -- -- -- --
610.11 1.15 4.56 -- -- 1.52 -- -- -0.199 -- 27.1 1373 -- --
725.31 1.26 4.57 -- -- -- -- -- -0.254 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 306.57 humidity 70.0 14400 < th dose independent rect. 19 1
2 309.61 humidity 70.0 14400 < th dose independent rect. 19 12
4 310.46 humidity 70.0 14400 > th dose independent rect. 19 1
18 311.40 humidity 70.0 14400 > th dose independent rect. 19 12
19 311.54 humidity 70.0 14400 > th dose independent rect. 19 9
25 321.62 radiation 10.0 14400 < th dose independent rect. 16 15
29 323.71 radiation 10.0 14400 < th dose independent rect. 15 4
54 325.06 radiation 10.0 14400 < th dose independent sin 13 NA
56 325.60 radiation 1.0 14400 > th dose dependent rect. 16 15
66 326.39 radiation 1.0 14400 > th dose dependent rect. 5 1
68 326.45 radiation 30.0 14400 < th dose independent rect. 15 18
92 326.79 radiation 30.0 14400 < th dose dependent rect. 16 15
101 327.37 radiation 30.0 14400 > th dose dependent rect. 15 18
103 327.41 radiation 40.0 14400 > th dose dependent sin 13 NA
115 327.97 radiation 30.0 14400 > th dose dependent rect. 7 2
132 328.09 radiation 40.0 14400 > th dose dependent rect. 13 21
134 328.22 radiation 40.0 14400 < th dose independent sin 12 NA
151 329.04 radiation 10.0 14400 < th dose dependent rect. 2 4
172 329.55 precipitation 0.1 43200 < th dose independent rect. 17 6
173 329.55 precipitation 0.1 43200 < th dose dependent rect. 17 6
174 329.57 precipitation 0.1 43200 > th dose independent rect. 17 6
179 329.64 radiation 1.0 14400 > th dose dependent rect. 15 4
192 329.72 radiation 10.0 14400 < th dose dependent rect. 21 9
220 329.98 radiation 10.0 14400 < th dose dependent sin 13 NA
222 329.98 radiation 30.0 14400 < th dose dependent rect. 15 5
238 330.06 radiation 10.0 14400 < th dose dependent rect. 15 4
240 330.06 radiation 10.0 14400 < th dose dependent rect. 15 7
263 330.21 precipitation 0.1 43200 > th dose independent rect. 14 9
265 330.22 radiation 40.0 14400 < th dose independent rect. 13 20
267 330.28 precipitation 0.1 43200 < th dose independent rect. 14 9
275 330.28 precipitation 0.1 43200 < th dose dependent rect. 14 9
286 330.39 radiation 40.0 14400 > th dose dependent rect. 13 3
327 330.52 radiation 10.0 14400 > th dose independent rect. 16 15
339 330.69 precipitation 0.1 43200 > th dose independent rect. 11 11
375 330.93 precipitation 0.1 43200 < th dose independent rect. 11 11
376 330.93 precipitation 0.1 43200 < th dose dependent rect. 11 11
397 331.04 radiation 20.0 14400 > th dose dependent rect. 15 3
477 331.66 humidity 70.0 43200 > th dose dependent rect. 18 1
500 331.79 precipitation 0.1 43200 > th dose dependent rect. 10 16
520 331.87 radiation 30.0 1440 > th dose independent rect. 15 17
521 331.87 precipitation 0.1 43200 > th dose dependent rect. 14 12
596 332.20 wind 5.0 43200 > th dose independent rect. 5 7
604 332.24 radiation 1.0 14400 > th dose dependent sin 13 NA
606 332.26 precipitation 0.1 43200 > th dose dependent rect. 17 9
611 332.36 radiation 30.0 1440 > th dose independent rect. 15 1
618 332.44 precipitation 0.1 43200 > th dose independent rect. 11 8
620 332.48 radiation 40.0 14400 < th dose independent rect. 8 1
675 332.74 radiation 1.0 14400 > th dose independent rect. 17 1
706 332.87 precipitation 0.1 43200 < th dose independent rect. 11 8
707 332.87 precipitation 0.1 43200 < th dose dependent rect. 11 8
752 333.09 radiation 40.0 14400 < th dose independent rect. 6 4
777 333.18 radiation 40.0 14400 < th dose independent rect. 2 8
804 333.26 wind 5.0 43200 > th dose independent rect. 7 5
806 333.27 precipitation 0.1 43200 > th dose dependent sin 17 NA
821 333.33 wind 5.0 43200 < th dose independent rect. 5 7
824 333.34 radiation 40.0 14400 < th dose independent rect. 21 13
833 333.36 radiation 30.0 1440 < th dose independent rect. 15 7
844 333.43 radiation 30.0 1440 < th dose independent rect. 15 5
845 333.44 wind 5.0 43200 > th dose independent rect. 20 18
891 333.73 precipitation 0.1 43200 > th dose independent sin 19 NA
892 333.73 wind 5.0 43200 > th dose independent rect. 24 14
903 333.80 radiation 30.0 1440 < th dose independent rect. 15 1
905 333.81 precipitation 0.1 43200 > th dose independent rect. 14 5
912 333.85 precipitation 0.1 43200 < th dose independent sin 19 NA
915 333.85 precipitation 0.1 43200 < th dose dependent sin 19 NA
928 333.92 precipitation 0.1 43200 < th dose independent rect. 19 3
929 333.92 precipitation 0.1 43200 < th dose dependent rect. 19 3
932 333.93 precipitation 0.1 43200 > th dose independent rect. 19 3
951 334.06 radiation 30.0 1440 < th dose independent rect. 15 17
953 334.06 humidity 90.0 43200 > th dose dependent rect. 21 1
956 334.07 precipitation 0.1 43200 < th dose independent rect. 14 5
957 334.07 precipitation 0.1 43200 < th dose dependent rect. 14 5
976 334.13 temperature 25.0 14400 > th dose dependent rect. 21 1
978 334.14 radiation 30.0 1440 < th dose independent rect. 15 13