Os12g0407800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os12g0407800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 180.02 | 0.63 | 7.35 | -0.409 | 1.37 | 1.12 | 0.214 | 0.00395 | -0.514 | 19 | 49.67 | 4412 | -- | -- |
| 180.02 | 0.625 | 7.35 | -0.409 | 1.37 | 1.11 | 0.215 | -- | -0.514 | 19 | 49.67 | 4409 | -- | -- |
| 180.14 | 0.625 | 7.35 | -0.412 | 1.37 | 1.12 | -- | 0.024 | -0.515 | 19 | 49.65 | 4413 | -- | -- |
| 180.14 | 0.625 | 7.35 | -0.413 | 1.37 | 1.12 | -- | -- | -0.514 | 19 | 49.64 | 4412 | -- | -- |
| 277.19 | 0.775 | 7.31 | -0.205 | -- | 1.2 | -- | 1.2 | -0.544 | -- | 49.9 | 4841 | -- | -- |
| 202.63 | 0.667 | 7.38 | 0.0338 | 1.38 | -- | 0.226 | -- | -0.625 | 19.2 | -- | -- | -- | -- |
| 202.77 | 0.667 | 7.38 | 0.0291 | 1.38 | -- | -- | -- | -0.625 | 19.2 | -- | -- | -- | -- |
| 276.03 | 0.774 | 7.32 | -0.447 | -- | 1.73 | -- | -- | -0.539 | -- | 49.79 | 4903 | -- | -- |
| 183.73 | 0.631 | 7.35 | -- | 1.37 | 1.15 | -- | -- | -0.496 | 19.1 | 50 | 4512 | -- | -- |
| 302.72 | 0.813 | 7.34 | 0.0035 | -- | -- | -- | -- | -0.649 | -- | -- | -- | -- | -- |
| 202.79 | 0.666 | 7.38 | -- | 1.38 | -- | -- | -- | -0.628 | 19.2 | -- | -- | -- | -- |
| 280.42 | 0.78 | 7.31 | -- | -- | 1.45 | -- | -- | -0.516 | -- | 49.81 | 4905 | -- | -- |
| 302.72 | 0.812 | 7.34 | -- | -- | -- | -- | -- | -0.649 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 166.19 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 2 | 166.24 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 5 | 167.08 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 6 | 167.08 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 9 | 167.32 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 12 | 167.67 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 13 | 167.71 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 35 | 170.08 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 42 | 170.77 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 44 | 170.80 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 47 | 170.89 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 21 | 19 |
| 50 | 171.06 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 53 | 171.37 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 59 | 171.50 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 65 | 171.76 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 69 | 171.89 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 70 | 171.92 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 4 | 8 |
| 80 | 172.22 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 89 | 172.45 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 105 | 172.79 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 110 | 172.90 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 111 | 172.90 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 127 | 173.09 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 24 | 21 |
| 129 | 173.13 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 143 | 173.31 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 175 | 173.85 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 10 |
| 178 | 173.90 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 2 | 5 |
| 183 | 174.00 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 194 | 174.12 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 196 | 174.17 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 4 | 8 |
| 202 | 174.23 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 10 |
| 214 | 174.39 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 227 | 174.64 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 231 | 174.69 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 235 | 174.77 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 7 | 5 |
| 242 | 174.82 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 246 | 174.84 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 247 | 174.86 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 15 |
| 248 | 174.86 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 255 | 174.96 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 258 | 174.97 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 10 |
| 274 | 175.07 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 285 | 175.16 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 292 | 175.23 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 296 | 175.27 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 375 | 175.79 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 377 | 175.79 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 378 | 175.79 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 5 |
| 400 | 175.90 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 402 | 175.90 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 404 | 175.90 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 426 | 176.04 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 432 | 176.07 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 433 | 176.09 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 449 | 176.17 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 474 | 176.31 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 507 | 176.52 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 559 | 176.74 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 560 | 176.75 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 563 | 176.75 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 584 | 176.85 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 585 | 176.85 | temperature | 15.0 | 30 | > th | dose dependent | sin | 5 | NA |
| 587 | 176.85 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 588 | 176.85 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 591 | 176.86 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 595 | 176.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 605 | 176.91 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 632 | 177.06 | humidity | 50.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 645 | 177.12 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 646 | 177.13 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 675 | 177.24 | temperature | 25.0 | 90 | < th | dose independent | sin | 6 | NA |
| 683 | 177.30 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 701 | 177.37 | wind | 3.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 705 | 177.37 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 719 | 177.42 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 727 | 177.46 | humidity | 50.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 733 | 177.48 | temperature | 25.0 | 270 | < th | dose independent | sin | 8 | NA |
| 843 | 177.76 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 845 | 177.77 | temperature | 25.0 | 90 | > th | dose independent | rect. | 21 | 19 |
| 867 | 177.84 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 871 | 177.86 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 885 | 177.90 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 899 | 177.94 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 11 | 6 |
| 920 | 178.03 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 931 | 178.07 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 8 |
| 933 | 178.07 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 976 | 178.21 | wind | 3.0 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 978 | 178.21 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 981 | 178.23 | wind | 3.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 982 | 178.23 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 1000 | 178.29 | wind | 3.0 | 1440 | < th | dose independent | rect. | 8 | 5 |