Os12g0407100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0407100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130 | 0.536 | 5.41 | -0.505 | 0.338 | 0.506 | 1.21 | 1.87 | 0.317 | 11.7 | -0.006926 | 5292 | -- | -- |
| 132.27 | 0.536 | 5.45 | -0.512 | 0.333 | 0.793 | 1.25 | -- | 0.321 | 11.7 | 0.3789 | 4680 | -- | -- |
| 135.27 | 0.542 | 5.42 | -0.417 | 0.31 | 0.35 | -- | 2.14 | 0.307 | 11.3 | -0.02954 | 6904 | -- | -- |
| 138.89 | 0.549 | 5.44 | -0.455 | 0.334 | 0.783 | -- | -- | 0.321 | 11.3 | 0.424 | 4199 | -- | -- |
| 141.27 | 0.554 | 5.42 | -0.438 | -- | 0.374 | -- | 2.27 | 0.308 | -- | -2.508e-05 | 6912 | -- | -- |
| 145.51 | 0.566 | 5.46 | -0.249 | 0.332 | -- | 1.14 | -- | 0.25 | 11.4 | -- | -- | -- | -- |
| 151.09 | 0.576 | 5.46 | -0.204 | 0.328 | -- | -- | -- | 0.255 | 11.3 | -- | -- | -- | -- |
| 142.58 | 0.556 | 5.46 | -0.509 | -- | 0.786 | -- | -- | 0.331 | -- | 0.4913 | 16999 | -- | -- |
| 141.78 | 0.555 | 5.44 | -- | 0.301 | 0.682 | -- | -- | 0.383 | 11.4 | 0.3819 | 14000 | -- | -- |
| 157.8 | 0.587 | 5.47 | -0.212 | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
| 152.18 | 0.577 | 5.45 | -- | 0.33 | -- | -- | -- | 0.277 | 11.3 | -- | -- | -- | -- |
| 148.04 | 0.567 | 5.43 | -- | -- | 0.642 | -- | -- | 0.402 | -- | 0.3803 | 17003 | -- | -- |
| 158.98 | 0.589 | 5.46 | -- | -- | -- | -- | -- | 0.275 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.73 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 2 | 128.78 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 12 |
| 3 | 128.79 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 12 |
| 4 | 128.79 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 12 |
| 8 | 128.83 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 9 | 128.84 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 15 | 128.91 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 19 | 128.91 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 8 |
| 22 | 128.92 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 8 |
| 29 | 128.99 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 19 | NA |
| 30 | 128.99 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 19 | NA |
| 33 | 128.99 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 19 | NA |
| 42 | 129.04 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 16 |
| 50 | 129.06 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 16 |
| 51 | 129.06 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 16 |
| 61 | 129.09 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 18 |
| 63 | 129.09 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 16 |
| 64 | 129.10 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 72 | 129.11 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 18 |
| 74 | 129.11 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 18 |
| 95 | 129.15 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 102 | 129.16 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 12 |
| 103 | 129.16 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 12 |
| 106 | 129.16 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 12 |
| 145 | 129.23 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 146 | 129.23 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 150 | 129.23 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 179 | 129.28 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 11 |
| 182 | 129.29 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 203 | 129.31 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 18 | NA |
| 257 | 129.40 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 273 | 129.44 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 345 | 129.58 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 366 | 129.62 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 368 | 129.63 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 387 | 129.67 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 416 | 129.71 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 457 | 129.77 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 14 |
| 462 | 129.77 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 14 |
| 484 | 129.85 | humidity | 60.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 486 | 129.85 | humidity | 60.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 502 | 129.89 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 0 | NA |
| 503 | 129.89 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 0 | NA |
| 505 | 129.89 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 0 | NA |
| 545 | 129.98 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 577 | 130.05 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 1 | NA |
| 708 | 130.20 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 774 | 130.26 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 779 | 130.27 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 24 | 23 |
| 791 | 130.29 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 847 | 130.36 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 855 | 130.37 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 23 |
| 865 | 130.38 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 23 |
| 866 | 130.39 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 963 | 130.51 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 11 | NA |
| 964 | 130.51 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 7 | 5 |