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Os12g0405700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Wound-induced basic protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.1 (0.0165) R2 : 0.0115
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0801 (0.0348) R2dN8 : 0.0148 R2N8 : 0.0115
σ : 0.311
deviance : 44.44
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.91 0.239 13.2 -0.0475 0.529 0.098 0.207 -0.944 0.0162 17.9 20.1 2748 -- --
27.52 0.244 13.1 0.0409 0.524 0.272 0.2 -- 0.0443 17.9 19.5 11047 -- --
25.99 0.237 13.2 -0.0475 0.521 0.0952 -- -0.936 0.0157 17.9 20.5 2714 -- --
27.16 0.243 13.2 -0.0445 0.509 0.359 -- -- 0.0275 17.9 16.5 24253 -- --
31.37 0.261 13.2 -0.0315 -- 0.413 -- -0.836 -0.0911 -- 26.6 322 -- --
28.7 0.251 13.1 0.251 0.52 -- 0.303 -- 0.117 18 -- -- -- --
28.92 0.252 13.1 0.248 0.521 -- -- -- 0.118 18 -- -- -- --
31.18 0.26 13.1 0.127 -- 0.418 -- -- -0.000817 -- 26.46 320 -- --
27.19 0.243 13.1 -- 0.513 0.336 -- -- 0.0417 18 16.2 24237 -- --
43.01 0.306 13.1 0.233 -- -- -- -- 0.106 -- -- -- -- --
30.54 0.259 13.1 -- 0.518 -- -- -- 0.0902 18 -- -- -- --
31.6 0.262 13.1 -- -- 0.429 -- -- -0.0175 -- 26.46 318 -- --
44.44 0.311 13.1 -- -- -- -- -- 0.0801 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.17 radiation 10.0 43200 < th dose dependent rect. 21 6
2 25.27 temperature 20.0 4320 > th dose independent rect. 20 3
3 25.30 temperature 20.0 4320 < th dose independent rect. 20 3
7 25.36 temperature 20.0 4320 > th dose independent rect. 21 1
15 25.46 precipitation 0.1 14400 < th dose independent rect. 13 1
18 25.46 precipitation 0.1 14400 < th dose dependent rect. 13 1
29 25.59 precipitation 0.1 14400 > th dose independent rect. 13 1
31 25.59 precipitation 0.1 14400 > th dose dependent rect. 13 1
32 25.60 temperature 20.0 1440 < th dose independent rect. 5 1
34 25.61 temperature 10.0 30 > th dose dependent rect. 9 17
45 25.68 humidity 70.0 30 > th dose dependent rect. 2 18
49 25.71 wind 1.0 14400 > th dose independent rect. 23 3
53 25.72 temperature 20.0 1440 < th dose independent rect. 4 3
55 25.72 temperature 10.0 270 > th dose dependent rect. 5 9
56 25.73 temperature 20.0 1440 > th dose independent rect. 5 1
63 25.75 temperature 20.0 1440 > th dose independent rect. 4 3
67 25.76 atmosphere 1005.0 30 > th dose independent rect. 2 7
70 25.76 wind 9.0 30 < th dose dependent rect. 2 18
75 25.78 radiation 40.0 10 < th dose independent rect. 4 16
89 25.81 radiation 40.0 10 < th dose independent rect. 2 18
105 25.87 humidity 80.0 30 > th dose independent rect. 2 18
109 25.88 humidity 60.0 10 > th dose dependent rect. 4 16
115 25.90 wind 5.0 10 < th dose independent rect. 2 18
126 25.91 temperature 10.0 270 > th dose dependent rect. 7 16
127 25.92 temperature 10.0 43200 > th dose independent rect. 10 6
149 25.96 radiation 20.0 1440 < th dose independent rect. 11 1
153 25.96 temperature 10.0 10 > th dose dependent rect. 9 15
155 25.97 temperature 20.0 4320 > th dose independent sin 15 NA
167 25.98 radiation 30.0 4320 < th dose independent rect. 16 16
168 25.98 temperature 30.0 10 < th dose independent rect. 2 18
180 25.99 temperature 25.0 720 > th dose dependent rect. 22 3
190 26.01 temperature 20.0 4320 < th dose independent sin 15 NA
207 26.02 radiation 40.0 4320 < th dose independent rect. 16 5
226 26.04 wind 1.0 14400 < th dose independent rect. 22 4
227 26.04 atmosphere 1005.0 270 > th dose independent rect. 24 8
233 26.05 precipitation 0.1 30 < th dose independent rect. 20 6
242 26.05 precipitation 0.1 30 < th dose dependent rect. 20 6
245 26.06 temperature 15.0 30 > th dose independent rect. 20 6
267 26.07 humidity 80.0 4320 < th dose independent rect. 22 2
287 26.08 humidity 90.0 4320 > th dose dependent rect. 5 5
313 26.10 temperature 25.0 4320 < th dose dependent rect. 20 1
314 26.10 humidity 90.0 4320 > th dose dependent rect. 5 9
318 26.11 temperature 10.0 1440 > th dose independent rect. 21 6
321 26.11 temperature 30.0 1440 < th dose independent rect. 21 6
325 26.11 humidity 50.0 1440 > th dose independent rect. 21 6
331 26.11 atmosphere 995.0 1440 > th dose independent rect. 21 6
332 26.11 radiation 1.0 1440 < th dose independent rect. 21 6
353 26.11 radiation 1.0 14400 > th dose independent rect. 18 11
361 26.11 temperature 10.0 1440 > th dose independent rect. 3 18
365 26.11 temperature 20.0 90 > th dose dependent rect. 8 6
367 26.11 radiation 1.0 1440 < th dose dependent rect. 21 6
382 26.12 temperature 30.0 30 < th dose dependent rect. 2 18
387 26.13 wind 1.0 14400 < th dose independent rect. 20 6
401 26.13 wind 9.0 30 < th dose dependent rect. 20 6
412 26.14 wind 7.0 30 < th dose independent rect. 20 6
422 26.14 temperature 20.0 1440 > th dose dependent rect. 19 2
428 26.14 temperature 15.0 270 > th dose dependent rect. 23 8
433 26.15 temperature 25.0 720 > th dose independent rect. 23 1
441 26.15 temperature 30.0 30 < th dose independent rect. 20 6
442 26.15 humidity 50.0 30 > th dose independent rect. 20 6
445 26.15 atmosphere 995.0 30 > th dose independent rect. 20 6
446 26.15 radiation 1.0 30 < th dose independent rect. 20 6
468 26.15 temperature 10.0 30 > th dose independent rect. 2 18
470 26.15 atmosphere 1015.0 30 < th dose independent rect. 2 18
473 26.15 radiation 1.0 30 < th dose dependent rect. 20 6
497 26.16 temperature 25.0 720 > th dose dependent rect. 23 1
508 26.16 humidity 60.0 10 > th dose dependent rect. 24 20
528 26.17 temperature 20.0 270 > th dose dependent rect. 9 1
541 26.18 radiation 1.0 14400 > th dose independent rect. 18 1
569 26.18 temperature 20.0 10 > th dose dependent rect. 8 7
572 26.18 temperature 30.0 10 < th dose dependent rect. 4 16
573 26.18 radiation 40.0 10 < th dose dependent rect. 4 16
598 26.19 temperature 30.0 90 < th dose dependent rect. 11 9
616 26.20 temperature 20.0 270 > th dose dependent rect. 8 3
634 26.21 radiation 30.0 4320 < th dose independent rect. 21 11
670 26.22 temperature 15.0 10 > th dose dependent rect. 2 7
677 26.23 atmosphere 1005.0 14400 > th dose independent rect. 16 1
680 26.23 wind 9.0 14400 < th dose independent rect. 23 4
681 26.23 atmosphere 1005.0 14400 > th dose independent rect. 14 4
716 26.23 temperature 25.0 270 > th dose dependent rect. 18 19
721 26.24 radiation 30.0 4320 < th dose independent rect. 6 2
747 26.24 precipitation 0.1 30 < th dose independent rect. 9 17
757 26.24 precipitation 0.1 270 < th dose independent rect. 16 23
774 26.24 precipitation 0.1 30 < th dose dependent rect. 9 17
775 26.24 radiation 40.0 30 < th dose dependent rect. 2 18
778 26.24 precipitation 0.1 270 < th dose dependent rect. 16 23
781 26.25 humidity 90.0 14400 > th dose independent rect. 23 1
787 26.25 radiation 30.0 4320 < th dose independent rect. 24 8
790 26.25 wind 1.0 14400 < th dose independent rect. 19 10
816 26.25 radiation 20.0 4320 > th dose dependent rect. 16 16
818 26.26 atmosphere 1005.0 14400 < th dose independent rect. 15 2
819 26.26 wind 5.0 43200 > th dose independent rect. 23 3
831 26.26 wind 1.0 14400 > th dose independent rect. 19 10
865 26.27 wind 5.0 43200 < th dose independent rect. 23 4
913 26.28 radiation 30.0 4320 < th dose independent rect. 2 6
962 26.29 humidity 90.0 4320 > th dose dependent sin 1 NA
968 26.29 wind 7.0 30 < th dose dependent rect. 2 7
990 26.30 radiation 1.0 14400 < th dose independent rect. 18 11