Os12g0405400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0405400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.48 | 0.31 | 9.09 | -0.348 | 0.887 | 0.313 | 0.624 | 0.893 | 0.192 | 1.45 | 21.6 | 16 | -- | -- |
| 46.42 | 0.32 | 9.12 | -0.568 | 0.868 | 0.292 | 0.0225 | -- | 0.145 | 1.54 | 21.16 | 13 | -- | -- |
| 44.44 | 0.31 | 9.1 | -0.422 | 0.882 | 0.296 | -- | 0.632 | 0.183 | 1.49 | 21.6 | 36 | -- | -- |
| 46.38 | 0.317 | 9.12 | -0.59 | 0.867 | 0.28 | -- | -- | 0.141 | 1.55 | 21.5 | 74 | -- | -- |
| 84.99 | 0.429 | 9.07 | -0.235 | -- | 0.0739 | -- | 0.729 | 0.262 | -- | 23 | 310 | -- | -- |
| 50.58 | 0.333 | 9.1 | -0.496 | 0.778 | -- | -0.0319 | -- | 0.211 | 1.6 | -- | -- | -- | -- |
| 50.58 | 0.333 | 9.1 | -0.495 | 0.778 | -- | -- | -- | 0.211 | 1.6 | -- | -- | -- | -- |
| 73.27 | 0.399 | 9.14 | -0.651 | -- | 0.619 | -- | -- | 0.0142 | -- | 25 | 989 | -- | -- |
| 55.01 | 0.345 | 9.11 | -- | 0.833 | 0.2 | -- | -- | 0.205 | 1.53 | 21.5 | 67 | -- | -- |
| 87.58 | 0.437 | 9.09 | -0.464 | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
| 57.04 | 0.353 | 9.09 | -- | 0.769 | -- | -- | -- | 0.267 | 1.58 | -- | -- | -- | -- |
| 79.01 | 0.414 | 9.11 | -- | -- | -0.484 | -- | -- | 0.338 | -- | 28 | 68 | -- | -- |
| 93.25 | 0.451 | 9.08 | -- | -- | -- | -- | -- | 0.28 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.51 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 17 |
| 18 | 43.66 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 1 |
| 51 | 43.94 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 11 |
| 97 | 44.25 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 100 | 44.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 101 | 44.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 11 |
| 105 | 44.28 | temperature | 25 | 270 | < th | dose dependent | sin | 14 | NA |
| 114 | 44.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 121 | 44.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 140 | 44.39 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 11 |
| 150 | 44.43 | temperature | 15 | 30 | > th | dose dependent | rect. | 18 | 11 |
| 170 | 44.49 | wind | 3 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 176 | 44.50 | wind | 5 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 198 | 44.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 200 | 44.57 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 3 |
| 205 | 44.58 | wind | 5 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 221 | 44.62 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 225 | 44.63 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 226 | 44.64 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 242 | 44.65 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 252 | 44.67 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 264 | 44.68 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 270 | 44.69 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 272 | 44.69 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 273 | 44.69 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 276 | 44.70 | wind | 5 | 1440 | > th | dose dependent | rect. | 23 | 10 |
| 284 | 44.70 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 286 | 44.71 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 5 |
| 325 | 44.75 | wind | 5 | 1440 | > th | dose independent | rect. | 23 | 10 |
| 353 | 44.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 371 | 44.81 | wind | 5 | 1440 | < th | dose independent | rect. | 23 | 7 |
| 372 | 44.81 | wind | 5 | 1440 | < th | dose independent | rect. | 23 | 10 |
| 378 | 44.82 | wind | 5 | 1440 | > th | dose independent | rect. | 23 | 7 |
| 384 | 44.83 | wind | 5 | 1440 | > th | dose dependent | rect. | 22 | 8 |
| 486 | 44.98 | temperature | 20 | 270 | > th | dose dependent | sin | 12 | NA |
| 524 | 45.03 | wind | 7 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 840 | 45.32 | wind | 7 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 922 | 45.39 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 960 | 45.42 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 961 | 45.42 | humidity | 70 | 43200 | > th | dose independent | rect. | 8 | 1 |