Os12g0405300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0405300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.65 | 0.45 | 8.47 | 2.99 | 0.697 | -2.25 | 0.903 | 3.56 | 0.805 | 7.45 | 13.87 | 347 | -- | -- |
| 99.53 | 0.465 | 8.53 | 2.45 | 0.688 | -2.13 | 0.334 | -- | 0.667 | 7.62 | 15.04 | 345 | -- | -- |
| 92.61 | 0.448 | 8.48 | 2.98 | 0.701 | -2.02 | -- | 3.12 | 0.807 | 7.55 | 17.3 | 333 | -- | -- |
| 99.8 | 0.465 | 8.54 | 2.45 | 0.674 | -2.15 | -- | -- | 0.656 | 7.38 | 14.9 | 353 | -- | -- |
| 109.37 | 0.487 | 8.46 | 3.22 | -- | -2.39 | -- | 3.51 | 0.932 | -- | 19.36 | 417 | -- | -- |
| 151.06 | 0.576 | 8.6 | 1.97 | 1.25 | -- | 0.546 | -- | 0.34 | 6.49 | -- | -- | -- | -- |
| 151.79 | 0.577 | 8.6 | 1.98 | 1.26 | -- | -- | -- | 0.338 | 6.44 | -- | -- | -- | -- |
| 117.18 | 0.504 | 8.53 | 2.59 | -- | -2.59 | -- | -- | 0.754 | -- | 15.93 | 426 | -- | -- |
| 241.93 | 0.724 | 8.62 | -- | 1 | -1.03 | -- | -- | 0.242 | 6.58 | 2.293 | 365 | -- | -- |
| 233.84 | 0.715 | 8.62 | 2.01 | -- | -- | -- | -- | 0.365 | -- | -- | -- | -- | -- |
| 254.67 | 0.746 | 8.65 | -- | 1.28 | -- | -- | -- | 0.118 | 6.35 | -- | -- | -- | -- |
| 265.31 | 0.759 | 8.65 | -- | -- | -1.59 | -- | -- | 0.255 | -- | 24.5 | 396 | -- | -- |
| 340.17 | 0.861 | 8.67 | -- | -- | -- | -- | -- | 0.142 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.00 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 2 | 89.72 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 4 | 89.86 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 8 |
| 11 | 90.72 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 12 | 90.77 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 15 | 90.92 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 18 |
| 25 | 91.66 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 40 | 91.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 44 | 92.08 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 46 | 92.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 51 | 92.28 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 57 | 92.35 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 61 | 92.41 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 64 | 92.48 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 66 | 92.49 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 73 | 92.62 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 7 | 9 |
| 87 | 92.75 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 98 | 92.86 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 111 | 93.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 112 | 93.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 121 | 93.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 129 | 93.26 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 130 | 93.27 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 144 | 93.30 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 156 | 93.37 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 160 | 93.42 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 164 | 93.45 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 10 |
| 174 | 93.51 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 186 | 93.66 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 12 |
| 190 | 93.66 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 194 | 93.68 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 204 | 93.73 | temperature | 20 | 4320 | > th | dose dependent | sin | 0 | NA |
| 298 | 94.03 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 313 | 94.09 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 361 | 94.20 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 405 | 94.33 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 434 | 94.41 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 460 | 94.49 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 465 | 94.50 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 467 | 94.50 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 17 |
| 473 | 94.51 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 490 | 94.55 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 499 | 94.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 17 |
| 525 | 94.65 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 7 | 14 |
| 526 | 94.65 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 534 | 94.66 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 23 |
| 541 | 94.68 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 573 | 94.74 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 610 | 94.86 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 21 |
| 619 | 94.87 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 628 | 94.90 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 21 |
| 637 | 94.95 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 676 | 95.06 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 690 | 95.09 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 694 | 95.10 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 16 |
| 734 | 95.22 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 797 | 95.31 | temperature | 10 | 4320 | > th | dose dependent | sin | 3 | NA |
| 803 | 95.32 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 805 | 95.32 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 809 | 95.32 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 22 |
| 832 | 95.36 | radiation | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 851 | 95.39 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 882 | 95.42 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 899 | 95.44 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 955 | 95.48 | temperature | 10 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 992 | 95.52 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 17 |