Os12g0298800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0298800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 311.72 | 0.83 | 3.7 | 0.129 | 0.281 | -1.6 | 0.435 | -2.91 | -0.0671 | 2.46 | 26.47 | 3301 | -- | -- |
| 319.02 | 0.832 | 3.76 | -0.322 | 0.222 | -1.17 | 0.407 | -- | -0.0867 | 2.35 | 33 | 2609 | -- | -- |
| 312.39 | 0.823 | 3.7 | 0.119 | 0.281 | -1.6 | -- | -2.92 | -0.0687 | 2.31 | 26.45 | 3315 | -- | -- |
| 319.19 | 0.832 | 3.78 | -0.411 | 0.185 | -1.26 | -- | -- | -0.152 | 2.38 | 31.89 | 2577 | -- | -- |
| 315.67 | 0.827 | 3.71 | 0.119 | -- | -1.46 | -- | -2.37 | -0.0806 | -- | 27.3 | 2592 | -- | -- |
| 350.2 | 0.877 | 3.72 | 0.101 | 0.321 | -- | 0.396 | -- | 0.125 | 1.98 | -- | -- | -- | -- |
| 350.8 | 0.877 | 3.72 | 0.0891 | 0.321 | -- | -- | -- | 0.123 | 1.87 | -- | -- | -- | -- |
| 321.13 | 0.835 | 3.78 | -0.426 | -- | -1.32 | -- | -- | -0.161 | -- | 31.76 | 2554 | -- | -- |
| 322.85 | 0.837 | 3.76 | -- | 0.198 | -1.09 | -- | -- | -0.07 | 2.47 | 32.6 | 2547 | -- | -- |
| 357.01 | 0.883 | 3.71 | 0.102 | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
| 351.01 | 0.876 | 3.72 | -- | 0.322 | -- | -- | -- | 0.113 | 1.88 | -- | -- | -- | -- |
| 325.06 | 0.84 | 3.76 | -- | -- | -1.14 | -- | -- | -0.0763 | -- | 32.6 | 2541 | -- | -- |
| 357.29 | 0.882 | 3.72 | -- | -- | -- | -- | -- | 0.119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 310.71 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 3 |
| 2 | 310.72 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 3 | 310.74 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 3 |
| 5 | 310.77 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 192 | 311.79 | temperature | 25 | 4320 | < th | dose dependent | sin | 12 | NA |
| 336 | 312.28 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 432 | 312.54 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 17 |
| 702 | 313.28 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 714 | 313.31 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 731 | 313.36 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 768 | 313.46 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 23 |
| 799 | 313.53 | temperature | 25 | 4320 | < th | dose dependent | rect. | 24 | 23 |