Os12g0298700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0298700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.28 | 0.439 | 6.44 | 0.17 | 0.17 | 0.491 | 0.519 | 0.839 | 0.283 | 5.15 | 0.8758 | 6750 | -- | -- |
| 87.42 | 0.435 | 6.46 | 0.0985 | 0.17 | 0.687 | 0.521 | -- | 0.284 | 5.24 | 0.8474 | 6280 | -- | -- |
| 87.95 | 0.437 | 6.44 | 0.171 | 0.176 | 0.491 | -- | 0.865 | 0.282 | 5.22 | 0.8815 | 6750 | -- | -- |
| 87.99 | 0.437 | 6.46 | 0.093 | 0.171 | 0.692 | -- | -- | 0.282 | 5.22 | 0.851 | 6750 | -- | -- |
| 89.52 | 0.441 | 6.44 | 0.193 | -- | 0.453 | -- | 1.03 | 0.282 | -- | 0.8801 | 6748 | -- | -- |
| 100.11 | 0.469 | 6.47 | 0.35 | 0.178 | -- | 0.611 | -- | 0.227 | 4.8 | -- | -- | -- | -- |
| 101.08 | 0.471 | 6.47 | 0.347 | 0.183 | -- | -- | -- | 0.224 | 4.91 | -- | -- | -- | -- |
| 89.59 | 0.441 | 6.46 | 0.0989 | -- | 0.692 | -- | -- | 0.286 | -- | 0.8548 | 6749 | -- | -- |
| 88.22 | 0.437 | 6.46 | -- | 0.172 | 0.7 | -- | -- | 0.282 | 5.2 | 0.8488 | 6749 | -- | -- |
| 102.84 | 0.474 | 6.48 | 0.354 | -- | -- | -- | -- | 0.229 | -- | -- | -- | -- | -- |
| 104.27 | 0.478 | 6.48 | -- | 0.189 | -- | -- | -- | 0.185 | 4.85 | -- | -- | -- | -- |
| 89.81 | 0.441 | 6.46 | -- | -- | 0.722 | -- | -- | 0.283 | -- | 0.8408 | 6750 | -- | -- |
| 106.15 | 0.481 | 6.48 | -- | -- | -- | -- | -- | 0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.01 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 18 | 3 |
| 2 | 85.08 | wind | 5e+00 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 11 | 85.37 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 16 | 5 |
| 12 | 85.39 | wind | 7e+00 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 14 | 85.42 | wind | 7e+00 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 66 | 86.01 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 20 | 7 |
| 72 | 86.05 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 75 | 86.07 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 91 | 86.16 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 109 | 86.27 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 256 | 87.36 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 271 | 87.43 | wind | 9e+00 | 14400 | > th | dose dependent | sin | 12 | NA |
| 294 | 87.62 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 351 | 87.96 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 20 | 15 |
| 360 | 87.99 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 362 | 88.00 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 371 | 88.04 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 374 | 88.05 | wind | 5e+00 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 383 | 88.10 | wind | 7e+00 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 388 | 88.10 | wind | 7e+00 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 439 | 88.23 | wind | 7e+00 | 14400 | < th | dose independent | sin | 14 | NA |
| 446 | 88.24 | wind | 5e+00 | 14400 | > th | dose dependent | rect. | 17 | 16 |
| 464 | 88.27 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 4 | 14 |
| 476 | 88.31 | atmosphere | 1e+03 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 482 | 88.33 | wind | 5e+00 | 14400 | > th | dose dependent | sin | 14 | NA |
| 503 | 88.37 | wind | 9e+00 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 520 | 88.41 | wind | 7e+00 | 14400 | > th | dose independent | sin | 14 | NA |
| 592 | 88.59 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 20 | 15 |
| 612 | 88.63 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 12 | 7 |
| 613 | 88.64 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 619 | 88.65 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 621 | 88.65 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 9 | 10 |
| 653 | 88.70 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 20 | 15 |
| 694 | 88.76 | atmosphere | 1e+03 | 14400 | < th | dose independent | sin | 2 | NA |
| 716 | 88.79 | atmosphere | 1e+03 | 14400 | > th | dose independent | sin | 2 | NA |
| 743 | 88.81 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 4 | 17 |
| 748 | 88.82 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 6 | 15 |
| 799 | 88.86 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 5 | 15 |
| 800 | 88.86 | wind | 5e+00 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 901 | 88.92 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 18 | 19 |
| 951 | 88.95 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 19 | 18 |
| 981 | 88.97 | precipitation | 1e-01 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 995 | 88.97 | precipitation | 1e-01 | 43200 | < th | dose dependent | rect. | 17 | 1 |