Os12g0297500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, starch-binding domain containing protein.
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Os12g0297500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, starch-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.34 | 0.309 | 9.89 | -0.0469 | 0.664 | -0.586 | -0.114 | 0.232 | -0.541 | 10.8 | 70.58 | 1414 | -- | -- |
| 43.4 | 0.307 | 9.89 | -0.0288 | 0.666 | -0.574 | -0.111 | -- | -0.536 | 10.8 | 70.46 | 1417 | -- | -- |
| 43.26 | 0.306 | 9.89 | -0.0304 | 0.662 | -0.632 | -- | 0.184 | -0.539 | 10.7 | 75.07 | 1451 | -- | -- |
| 43.31 | 0.306 | 9.89 | -0.0154 | 0.654 | -0.621 | -- | -- | -0.537 | 10.6 | 75 | 1478 | -- | -- |
| 66.55 | 0.382 | 9.9 | -0.043 | -- | -0.38 | -- | 0.307 | -0.516 | -- | 74 | 1551 | -- | -- |
| 48.28 | 0.326 | 9.88 | -0.0329 | 0.663 | -- | -0.163 | -- | -0.471 | 10.7 | -- | -- | -- | -- |
| 48.39 | 0.326 | 9.88 | -0.0394 | 0.664 | -- | -- | -- | -0.471 | 10.7 | -- | -- | -- | -- |
| 66.92 | 0.383 | 9.9 | -0.0302 | -- | -0.369 | -- | -- | -0.512 | -- | 74 | 1551 | -- | -- |
| 43.3 | 0.306 | 9.89 | -- | 0.652 | -0.63 | -- | -- | -0.538 | 10.6 | 75.84 | 1479 | -- | -- |
| 75.55 | 0.406 | 9.89 | -0.0521 | -- | -- | -- | -- | -0.475 | -- | -- | -- | -- | -- |
| 48.43 | 0.326 | 9.87 | -- | 0.664 | -- | -- | -- | -0.467 | 10.7 | -- | -- | -- | -- |
| 66.95 | 0.382 | 9.9 | -- | -- | -0.369 | -- | -- | -0.509 | -- | 74 | 1551 | -- | -- |
| 75.62 | 0.406 | 9.89 | -- | -- | -- | -- | -- | -0.469 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.94 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 3 | 40.14 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 10 | 40.38 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 2 | 12 |
| 33 | 40.50 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 35 | 40.51 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 39 | 40.52 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 40 | 40.53 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 5 | NA |
| 63 | 40.59 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 84 | 40.64 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 4 | NA |
| 94 | 40.65 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 141 | 40.73 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 167 | 40.76 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 169 | 40.76 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 188 | 40.78 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 10 | NA |
| 235 | 40.83 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 250 | 40.85 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 254 | 40.85 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 335 | 40.94 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 377 | 40.98 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 389 | 40.99 | atmosphere | 1005 | 43200 | < th | dose independent | no | NA | NA |
| 398 | 41.00 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 405 | 41.00 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 436 | 41.03 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 437 | 41.03 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 516 | 41.12 | atmosphere | 1005 | 43200 | > th | dose independent | no | NA | NA |
| 538 | 41.14 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 563 | 41.17 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 703 | 41.38 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 768 | 41.51 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 827 | 41.63 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 911 | 41.84 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 932 | 41.89 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 938 | 41.90 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 943 | 41.91 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 945 | 41.91 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 954 | 41.92 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 957 | 41.92 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 9 | 5 |