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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0294800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.32 (0.0368) R2 : 0.429
β1 : -2.11 (0.13) R2dD : 0.341 R2D : 0.342
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.05 (0.131) R2dE : 0.105 R2E : 0.092
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.323 (0.0867) R2dN8 : 0.0303 R2N8 : -0.0593
σ : 0.666
deviance : 204.53
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 10.9
memory length : 4400
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
208.85 0.679 5.25 -1.96 0.305 0.696 0.319 0.129 -0.0614 10.4 9.5 4412 -- --
203.34 0.664 5.28 -2.09 0.213 0.869 0.302 -- -0.201 12 10.54 4391 -- --
204.46 0.666 5.24 -2.05 0.205 0.764 -- -0.405 -0.125 10.6 10.52 4400 -- --
203.35 0.664 5.29 -2.08 0.2 0.893 -- -- -0.253 11.1 10.56 4391 -- --
204.39 0.666 5.32 -2.14 -- 1.02 -- -0.469 -0.328 -- 10.9 4399 -- --
222.33 0.699 5.23 -2.14 0.417 -- 0.219 -- 0.0118 10.7 -- -- -- --
222.53 0.699 5.23 -2.13 0.415 -- -- -- 0.0126 10.8 -- -- -- --
204.53 0.666 5.32 -2.11 -- 1.05 -- -- -0.323 -- 10.9 4400 -- --
288.84 0.792 5.22 -- 0.45 1.54 -- -- 0.0132 10 4.624 7094 -- --
233.2 0.714 5.24 -2.14 -- -- -- -- 0.0101 -- -- -- -- --
341.74 0.865 5.18 -- 0.433 -- -- -- 0.249 11.1 -- -- -- --
246.56 0.731 5.1 -- -- 1.75 -- -- 0.62 -- 5.199 47520 -- --
353.47 0.878 5.19 -- -- -- -- -- 0.247 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 197.57 temperature 10.0 270 > th dose dependent rect. 24 7
3 198.48 temperature 15.0 270 > th dose dependent rect. 1 5
4 198.62 atmosphere 995.0 270 > th dose dependent rect. 5 8
9 198.88 wind 9.0 1440 < th dose independent rect. 3 7
10 199.53 temperature 15.0 270 > th dose dependent rect. 2 3
13 199.71 atmosphere 995.0 270 > th dose dependent rect. 6 5
14 199.96 wind 1.0 270 > th dose independent rect. 5 8
24 200.58 atmosphere 995.0 10 > th dose dependent rect. 7 8
27 200.77 wind 9.0 270 < th dose independent rect. 7 17
31 200.83 atmosphere 1010.0 270 < th dose independent rect. 24 7
39 201.39 temperature 30.0 270 < th dose independent rect. 5 8
40 201.40 atmosphere 1015.0 270 < th dose independent rect. 11 10
41 201.41 wind 9.0 270 < th dose independent rect. 6 19
44 201.46 temperature 15.0 10 > th dose dependent rect. 2 6
45 201.51 temperature 20.0 270 > th dose independent rect. 2 3
50 201.55 temperature 10.0 90 > th dose dependent rect. 13 18
51 201.59 wind 9.0 270 < th dose independent rect. 5 8
55 201.65 temperature 20.0 270 > th dose independent rect. 1 5
56 201.66 wind 9.0 90 < th dose independent rect. 9 17
58 201.68 temperature 20.0 90 > th dose independent rect. 2 7
60 201.69 wind 9.0 270 < th dose independent rect. 5 21
64 201.71 atmosphere 1015.0 270 < th dose independent rect. 13 16
66 201.75 atmosphere 995.0 270 > th dose dependent rect. 24 6
67 201.76 wind 9.0 270 < th dose independent rect. 21 14
69 201.78 temperature 30.0 10 < th dose independent rect. 11 23
72 201.86 precipitation 0.1 270 < th dose independent rect. 5 8
74 201.86 precipitation 0.1 270 < th dose dependent rect. 5 8
76 201.90 atmosphere 995.0 270 > th dose dependent rect. 1 4
78 201.91 temperature 10.0 270 > th dose independent rect. 5 8
79 201.91 atmosphere 995.0 270 > th dose independent rect. 5 8
81 201.91 atmosphere 1015.0 270 < th dose independent rect. 5 8
82 201.91 temperature 10.0 270 > th dose independent rect. 13 16
83 201.91 precipitation 0.1 270 < th dose independent rect. 13 16
84 201.91 precipitation 0.1 270 < th dose dependent rect. 13 16
85 201.95 humidity 50.0 270 > th dose independent rect. 5 8
87 201.97 temperature 20.0 270 > th dose independent rect. 24 7
91 202.09 temperature 10.0 270 > th dose independent rect. 24 7
92 202.09 temperature 30.0 270 < th dose independent rect. 24 7
93 202.09 humidity 50.0 270 > th dose independent rect. 24 7
95 202.09 atmosphere 995.0 270 > th dose independent rect. 24 7
96 202.09 radiation 40.0 270 < th dose independent rect. 24 7
97 202.09 precipitation 0.1 270 < th dose independent rect. 24 7
98 202.09 temperature 10.0 270 > th dose independent rect. 7 17
99 202.09 precipitation 0.1 270 < th dose dependent rect. 24 7
100 202.10 wind 9.0 270 < th dose independent rect. 24 7
103 202.10 temperature 10.0 270 > th dose independent rect. 11 10
104 202.10 temperature 10.0 270 > th dose independent rect. 21 14
105 202.10 atmosphere 995.0 270 > th dose independent rect. 21 14
114 202.19 temperature 30.0 270 < th dose independent rect. 20 15
116 202.24 wind 9.0 90 < th dose dependent rect. 2 7
117 202.25 radiation 40.0 270 < th dose dependent rect. 24 7
118 202.26 precipitation 0.1 270 < th dose independent rect. 11 10
119 202.26 humidity 50.0 270 > th dose independent rect. 21 14
121 202.26 precipitation 0.1 270 < th dose dependent rect. 11 10
124 202.28 wind 1.0 270 < th dose dependent rect. 22 1
126 202.29 radiation 1.0 720 > th dose independent rect. 18 1
138 202.31 wind 1.0 270 > th dose independent rect. 7 17
148 202.43 atmosphere 995.0 270 > th dose independent rect. 13 16
149 202.44 wind 3.0 10 < th dose independent rect. 2 8
155 202.50 precipitation 0.1 270 < th dose independent rect. 7 17
156 202.50 precipitation 0.1 270 < th dose dependent rect. 7 17
168 202.57 temperature 10.0 270 > th dose dependent rect. 11 20
172 202.60 wind 1.0 270 > th dose independent rect. 13 16
178 202.65 humidity 50.0 270 > th dose dependent rect. 24 7
179 202.67 humidity 80.0 270 > th dose independent rect. 1 5
191 202.75 temperature 10.0 270 > th dose independent rect. 1 5
193 202.75 temperature 30.0 270 < th dose independent rect. 1 5
194 202.75 humidity 50.0 270 > th dose independent rect. 1 5
197 202.75 atmosphere 995.0 270 > th dose independent rect. 1 5
199 202.75 radiation 20.0 270 < th dose independent rect. 1 5
202 202.75 temperature 10.0 270 > th dose independent rect. 6 19
203 202.76 radiation 1.0 1440 > th dose independent rect. 11 1
204 202.76 wind 9.0 270 < th dose independent rect. 1 5
210 202.78 precipitation 0.1 270 < th dose independent rect. 1 5
213 202.78 precipitation 0.1 270 < th dose dependent rect. 1 5
231 202.82 radiation 40.0 270 < th dose dependent rect. 1 5
233 202.83 wind 1.0 270 < th dose independent rect. 22 1
243 202.89 precipitation 0.1 270 < th dose independent rect. 21 14
245 202.89 precipitation 0.1 270 < th dose dependent rect. 21 14
259 203.00 radiation 1.0 270 < th dose dependent rect. 2 3
261 203.01 humidity 80.0 270 > th dose independent rect. 2 3
264 203.03 wind 7.0 270 < th dose independent rect. 16 9
266 203.03 wind 9.0 270 < th dose dependent rect. 24 7
268 203.04 humidity 50.0 90 > th dose dependent rect. 2 7
269 203.05 radiation 1.0 270 < th dose independent rect. 1 7
271 203.05 temperature 10.0 10 > th dose dependent rect. 15 17
290 203.13 temperature 25.0 270 > th dose dependent rect. 10 1
294 203.16 wind 1.0 270 > th dose independent rect. 6 5
295 203.16 radiation 1.0 270 < th dose independent rect. 1 14
307 203.20 atmosphere 995.0 90 > th dose independent rect. 9 17
327 203.27 radiation 1.0 270 < th dose independent rect. 2 3
338 203.31 radiation 1.0 270 < th dose dependent rect. 1 15
339 203.32 wind 9.0 270 < th dose independent rect. 2 3
340 203.32 temperature 10.0 270 > th dose independent rect. 2 3
342 203.32 temperature 30.0 270 < th dose independent rect. 2 3
343 203.32 humidity 50.0 270 > th dose independent rect. 2 3
346 203.32 atmosphere 995.0 270 > th dose independent rect. 2 3
347 203.32 atmosphere 1010.0 270 < th dose independent rect. 2 3
352 203.32 temperature 10.0 270 > th dose independent rect. 5 21
384 203.38 radiation 20.0 270 < th dose dependent rect. 24 9
386 203.39 humidity 50.0 270 > th dose dependent rect. 1 5
394 203.41 atmosphere 995.0 270 > th dose independent rect. 11 9
413 203.48 radiation 20.0 270 < th dose dependent rect. 17 8
423 203.54 wind 9.0 90 < th dose independent rect. 2 7
424 203.54 temperature 10.0 90 > th dose independent rect. 2 7
426 203.54 humidity 50.0 90 > th dose independent rect. 2 7
427 203.54 atmosphere 995.0 90 > th dose independent rect. 2 7
429 203.54 temperature 10.0 90 > th dose independent rect. 9 17
432 203.55 atmosphere 995.0 270 > th dose dependent rect. 9 1
433 203.56 wind 9.0 270 < th dose dependent rect. 1 5
436 203.57 wind 9.0 270 < th dose independent rect. 13 16
437 203.58 atmosphere 1005.0 270 > th dose independent rect. 6 5
440 203.58 precipitation 0.1 90 < th dose independent rect. 2 7
441 203.58 precipitation 0.1 90 < th dose dependent rect. 2 7
442 203.59 radiation 1.0 270 > th dose independent rect. 6 7
443 203.59 wind 9.0 270 < th dose dependent rect. 2 3
461 203.64 wind 3.0 720 < th dose dependent rect. 4 1
469 203.67 temperature 10.0 270 > th dose independent rect. 17 8
470 203.67 radiation 20.0 270 < th dose independent rect. 17 8
473 203.67 temperature 10.0 270 > th dose independent rect. 1 16
474 203.67 atmosphere 1015.0 270 < th dose independent rect. 1 16
477 203.68 humidity 50.0 270 > th dose independent rect. 17 8
489 203.71 humidity 50.0 270 > th dose dependent rect. 2 3
502 203.76 temperature 30.0 270 < th dose independent rect. 18 7
503 203.76 temperature 25.0 10 > th dose dependent rect. 10 3
507 203.78 temperature 30.0 270 < th dose independent rect. 6 5
517 203.80 atmosphere 995.0 270 > th dose independent rect. 7 17
527 203.83 humidity 90.0 270 < th dose independent rect. 6 5
528 203.83 atmosphere 995.0 10 > th dose independent rect. 9 17
529 203.83 atmosphere 995.0 90 > th dose dependent rect. 8 18
530 203.84 radiation 1.0 270 < th dose independent rect. 17 8
532 203.85 precipitation 0.1 270 < th dose independent rect. 1 16
533 203.85 temperature 10.0 270 > th dose dependent rect. 7 4
534 203.85 precipitation 0.1 270 < th dose dependent rect. 1 16
535 203.86 wind 1.0 10 > th dose independent rect. 7 8
537 203.86 atmosphere 1015.0 270 < th dose independent rect. 11 19
541 203.87 radiation 1.0 270 > th dose independent rect. 4 9
563 203.90 temperature 20.0 90 > th dose independent rect. 13 19
577 203.94 wind 9.0 270 < th dose dependent rect. 17 8
578 203.95 precipitation 0.1 270 < th dose independent rect. 17 8
580 203.95 precipitation 0.1 270 < th dose dependent rect. 17 8
587 203.97 temperature 25.0 1440 < th dose independent rect. 23 1
607 204.02 radiation 40.0 90 < th dose independent rect. 13 18
616 204.04 wind 9.0 270 < th dose dependent rect. 19 5
618 204.04 wind 3.0 90 < th dose dependent rect. 2 14
621 204.06 precipitation 0.1 90 < th dose independent rect. 9 17
624 204.06 precipitation 0.1 90 < th dose dependent rect. 9 17
637 204.10 radiation 40.0 10 < th dose independent rect. 2 7
667 204.20 atmosphere 995.0 270 > th dose independent rect. 18 7
671 204.21 wind 1.0 270 > th dose independent rect. 11 9
680 204.24 wind 9.0 10 < th dose independent rect. 2 7
681 204.24 temperature 10.0 10 > th dose independent rect. 2 7
683 204.24 temperature 30.0 10 < th dose independent rect. 2 7
684 204.24 humidity 50.0 10 > th dose independent rect. 2 7
686 204.24 atmosphere 995.0 10 > th dose independent rect. 2 7
687 204.24 atmosphere 1015.0 10 < th dose independent rect. 2 7
689 204.24 temperature 10.0 10 > th dose independent rect. 9 17
690 204.24 atmosphere 995.0 270 > th dose independent rect. 1 17
692 204.25 wind 7.0 270 < th dose dependent rect. 21 2
701 204.27 radiation 20.0 270 < th dose dependent rect. 24 15
716 204.32 radiation 40.0 90 < th dose independent rect. 2 19
722 204.33 atmosphere 995.0 270 > th dose independent rect. 6 19
737 204.39 temperature 10.0 90 > th dose independent rect. 13 8
739 204.39 atmosphere 1010.0 90 < th dose independent rect. 13 8
752 204.42 humidity 50.0 4320 > th dose independent rect. 3 7
761 204.44 humidity 50.0 270 > th dose independent rect. 7 17
797 204.50 temperature 25.0 720 < th dose independent rect. 21 5
808 204.52 precipitation 0.1 270 < th dose independent rect. 11 19
809 204.52 precipitation 0.1 270 < th dose dependent rect. 11 19
841 204.56 temperature 20.0 270 > th dose independent rect. 11 20
844 204.56 radiation 40.0 10 < th dose dependent rect. 2 7
854 204.58 wind 9.0 270 < th dose independent rect. 11 9
857 204.59 humidity 50.0 270 > th dose independent rect. 6 19
860 204.59 wind 3.0 90 < th dose dependent rect. 2 19
863 204.60 temperature 10.0 1440 > th dose independent rect. 3 7
866 204.60 atmosphere 995.0 1440 > th dose independent rect. 3 7
868 204.60 temperature 10.0 1440 > th dose independent rect. 10 17
895 204.64 precipitation 0.1 90 < th dose independent rect. 13 8
901 204.64 precipitation 0.1 90 < th dose dependent rect. 13 8
904 204.65 radiation 1.0 270 > th dose independent rect. 6 5
909 204.66 humidity 60.0 270 > th dose independent rect. 7 4
916 204.68 temperature 25.0 1440 > th dose independent rect. 23 1
936 204.72 precipitation 0.1 270 < th dose independent rect. 6 5
940 204.72 precipitation 0.1 270 < th dose dependent rect. 6 5
951 204.75 temperature 10.0 270 > th dose independent rect. 6 5
953 204.75 atmosphere 1015.0 270 < th dose independent rect. 6 5
955 204.75 temperature 10.0 270 > th dose independent rect. 11 19
971 204.79 radiation 40.0 270 < th dose independent rect. 13 16
999 204.84 wind 9.0 4320 > th dose dependent rect. 13 1