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Os12g0293100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Telomerase reverse transcriptase (EC 2.7.7.49) (OsTERT).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.01 (0.0178) R2 : 0.00622
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0634 (0.0375) R2dN8 : 0.00803 R2N8 : 0.00622
σ : 0.336
deviance : 51.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.37 0.309 7.99 0.235 0.153 -0.25 -0.147 -1.52 0.101 10.6 67.89 6168 -- --
45.51 0.314 8 0.297 0.11 -0.38 -0.172 -- 0.103 9.95 68.12 3992 -- --
43.45 0.307 7.99 0.23 0.153 -0.247 -- -1.51 0.0986 10.7 67.99 6167 -- --
45.59 0.314 8 0.28 0.124 -0.38 -- -- 0.1 10.2 68.15 3987 -- --
44.69 0.311 7.99 0.198 -- -0.323 -- -1.53 0.107 -- 67.51 6889 -- --
48 0.325 8 0.28 0.165 -- -0.118 -- 0.0948 10.6 -- -- -- --
48.05 0.325 8 0.276 0.165 -- -- -- 0.0945 10.7 -- -- -- --
46.4 0.317 8 0.284 -- -0.426 -- -- 0.1 -- 68.42 3885 -- --
47.71 0.322 8 -- 0.133 -0.376 -- -- 0.086 10.3 68 3993 -- --
49.74 0.33 8.01 0.272 -- -- -- -- 0.0936 -- -- -- -- --
50.05 0.331 8.01 -- 0.163 -- -- -- 0.0638 10.6 -- -- -- --
48.51 0.324 8.01 -- -- -0.421 -- -- 0.0695 -- 68.03 3925 -- --
51.69 0.336 8.01 -- -- -- -- -- 0.0634 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.38 wind 9.0 14400 < th dose independent rect. 10 1
2 41.48 wind 9.0 14400 < th dose independent rect. 7 4
3 41.56 wind 9.0 14400 > th dose independent rect. 10 1
7 41.82 wind 3.0 14400 < th dose independent rect. 3 1
11 42.05 precipitation 0.1 14400 > th dose independent rect. 15 1
12 42.05 precipitation 0.1 14400 > th dose dependent rect. 15 1
13 42.07 precipitation 0.1 14400 < th dose independent rect. 15 1
14 42.07 precipitation 0.1 14400 < th dose dependent rect. 15 1
15 42.14 wind 3.0 14400 > th dose independent rect. 3 1
21 42.22 precipitation 0.1 14400 > th dose dependent rect. 3 4
25 42.25 wind 3.0 43200 < th dose dependent rect. 6 1
29 42.29 wind 3.0 43200 < th dose independent rect. 6 1
30 42.32 precipitation 0.1 14400 < th dose independent rect. 3 5
31 42.32 precipitation 0.1 14400 < th dose dependent rect. 3 5
32 42.34 wind 3.0 43200 > th dose independent rect. 6 1
36 42.37 precipitation 0.1 14400 > th dose independent rect. 3 5
44 42.40 humidity 60.0 14400 > th dose independent rect. 15 1
50 42.44 precipitation 0.1 14400 > th dose independent rect. 11 6
53 42.46 humidity 80.0 14400 > th dose independent rect. 13 1
57 42.47 precipitation 0.1 14400 < th dose independent rect. 11 6
58 42.47 precipitation 0.1 14400 < th dose dependent rect. 11 6
62 42.50 humidity 80.0 14400 > th dose independent rect. 10 1
74 42.56 wind 1.0 4320 > th dose independent rect. 17 1
75 42.56 humidity 80.0 14400 < th dose independent rect. 13 1
77 42.58 humidity 80.0 1440 < th dose independent rect. 22 14
78 42.58 wind 7.0 14400 > th dose dependent rect. 10 1
81 42.60 humidity 60.0 14400 < th dose independent rect. 15 1
96 42.64 humidity 80.0 14400 > th dose independent rect. 9 6
103 42.66 precipitation 0.1 14400 > th dose dependent rect. 11 6
105 42.67 humidity 80.0 1440 > th dose independent rect. 23 12
106 42.67 wind 3.0 14400 < th dose dependent rect. 3 2
114 42.70 wind 3.0 43200 > th dose independent rect. 12 1
124 42.72 wind 3.0 43200 < th dose dependent rect. 4 9
126 42.73 humidity 90.0 14400 > th dose dependent rect. 7 3
131 42.75 humidity 80.0 14400 < th dose independent rect. 10 1
151 42.79 humidity 60.0 14400 < th dose independent rect. 14 19
167 42.82 humidity 80.0 14400 < th dose independent rect. 9 6
173 42.83 humidity 60.0 14400 < th dose independent rect. 14 8
184 42.83 humidity 60.0 14400 > th dose independent rect. 14 19
185 42.83 wind 3.0 43200 < th dose dependent rect. 24 13
189 42.84 humidity 60.0 14400 < th dose independent rect. 14 6
193 42.84 humidity 80.0 14400 > th dose dependent rect. 9 1
194 42.84 wind 7.0 14400 > th dose dependent rect. 10 3
213 42.88 humidity 60.0 14400 > th dose independent rect. 14 6
233 42.90 humidity 80.0 1440 < th dose independent rect. 11 1
248 42.92 humidity 80.0 43200 > th dose independent rect. 5 1
268 42.92 precipitation 0.1 4320 < th dose independent rect. 1 16
273 42.92 precipitation 0.1 4320 < th dose dependent rect. 1 16
288 42.95 precipitation 0.1 4320 > th dose independent rect. 1 16
322 42.99 humidity 80.0 1440 > th dose independent rect. 11 1
327 42.99 wind 3.0 43200 < th dose dependent sin 6 NA
331 43.00 precipitation 0.1 14400 < th dose independent rect. 2 18
336 43.00 precipitation 0.1 14400 > th dose dependent rect. 2 15
337 43.00 precipitation 0.1 14400 < th dose dependent rect. 2 18
340 43.01 humidity 80.0 43200 < th dose independent rect. 4 1
344 43.01 precipitation 0.1 14400 > th dose independent rect. 2 18
359 43.03 wind 3.0 43200 < th dose independent rect. 11 2
377 43.04 humidity 70.0 1440 > th dose dependent rect. 11 1
379 43.04 humidity 80.0 14400 > th dose dependent rect. 8 7
385 43.05 wind 1.0 43200 > th dose dependent rect. 6 1
392 43.06 wind 3.0 14400 < th dose independent rect. 2 7
396 43.06 wind 3.0 43200 < th dose dependent rect. 5 4
420 43.07 precipitation 0.1 14400 > th dose independent rect. 23 21
421 43.07 precipitation 0.1 14400 < th dose independent rect. 23 21
427 43.07 precipitation 0.1 14400 < th dose dependent rect. 23 21
451 43.09 wind 7.0 14400 > th dose dependent rect. 12 1
453 43.09 wind 3.0 43200 < th dose dependent rect. 23 8
467 43.11 humidity 60.0 14400 < th dose independent sin 15 NA
535 43.13 humidity 80.0 43200 < th dose dependent rect. 4 1
543 43.13 humidity 70.0 14400 < th dose dependent rect. 11 22
545 43.14 humidity 80.0 1440 < th dose independent sin 6 NA
556 43.14 temperature 20.0 1440 > th dose dependent rect. 4 1
561 43.15 humidity 60.0 14400 > th dose independent sin 13 NA
563 43.15 humidity 90.0 14400 > th dose independent rect. 7 1
581 43.16 humidity 60.0 14400 < th dose independent rect. 11 9
612 43.17 wind 3.0 43200 < th dose independent rect. 1 14
634 43.18 humidity 70.0 14400 < th dose dependent rect. 11 10
655 43.19 humidity 90.0 14400 > th dose independent rect. 7 3
695 43.20 radiation 20.0 1440 < th dose dependent rect. 7 1
712 43.21 wind 1.0 4320 < th dose dependent rect. 17 2
713 43.21 humidity 70.0 14400 < th dose dependent rect. 11 2
735 43.22 wind 3.0 14400 < th dose independent rect. 24 9
761 43.23 wind 3.0 43200 < th dose independent rect. 5 9
797 43.25 humidity 70.0 14400 < th dose dependent sin 18 NA
852 43.27 humidity 60.0 14400 < th dose independent rect. 18 23
855 43.27 humidity 70.0 14400 < th dose dependent no NA NA
861 43.27 humidity 70.0 14400 < th dose dependent rect. 7 14
915 43.27 humidity 70.0 14400 < th dose dependent rect. 18 23
921 43.28 humidity 60.0 14400 < th dose independent no NA NA
926 43.28 precipitation 0.1 14400 < th dose independent rect. 13 7
928 43.28 precipitation 0.1 14400 > th dose independent rect. 12 8
930 43.28 humidity 60.0 14400 < th dose independent rect. 8 12