Os12g0292900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0292900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.52 | 0.35 | 11.6 | -1.45 | 1.11 | -0.55 | 0.217 | 0.143 | -0.433 | 5.52 | 80.77 | 67 | -- | -- |
| 55.52 | 0.347 | 11.6 | -1.44 | 1.11 | -0.548 | 0.302 | -- | -0.434 | 5.51 | 81.34 | 57 | -- | -- |
| 55.57 | 0.347 | 11.6 | -1.46 | 1.1 | -0.547 | -- | 0.212 | -0.436 | 5.51 | 81.15 | 58 | -- | -- |
| 55.73 | 0.348 | 11.6 | -1.44 | 1.11 | -0.542 | -- | -- | -0.432 | 5.49 | 80.89 | 57 | -- | -- |
| 82.46 | 0.423 | 11.6 | -1.5 | -- | 0.694 | -- | 0.326 | -0.299 | -- | 63.35 | 469 | -- | -- |
| 63.83 | 0.375 | 11.6 | -1.5 | 0.824 | -- | 0.306 | -- | -0.347 | 6.57 | -- | -- | -- | -- |
| 64.06 | 0.375 | 11.6 | -1.49 | 0.826 | -- | -- | -- | -0.348 | 6.53 | -- | -- | -- | -- |
| 82.63 | 0.423 | 11.6 | -1.48 | -- | 0.709 | -- | -- | -0.298 | -- | 62.62 | 463 | -- | -- |
| 109.5 | 0.487 | 11.5 | -- | 1.11 | -0.66 | -- | -- | -0.323 | 5.61 | 85.31 | 56 | -- | -- |
| 99.53 | 0.466 | 11.6 | -1.47 | -- | -- | -- | -- | -0.331 | -- | -- | -- | -- | -- |
| 122.73 | 0.518 | 11.5 | -- | 0.807 | -- | -- | -- | -0.182 | 6.63 | -- | -- | -- | -- |
| 139.09 | 0.549 | 11.5 | -- | -- | 0.803 | -- | -- | -0.155 | -- | 36.05 | 479 | -- | -- |
| 156.66 | 0.584 | 11.5 | -- | -- | -- | -- | -- | -0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.20 | radiation | 10.0 | 90 | > th | dose independent | sin | 6 | NA |
| 3 | 50.42 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 12 | 19 |
| 4 | 50.45 | radiation | 20.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 6 | 50.50 | radiation | 10.0 | 90 | < th | dose dependent | sin | 4 | NA |
| 7 | 50.51 | humidity | 70.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 13 | 50.63 | radiation | 10.0 | 10 | > th | dose independent | sin | 5 | NA |
| 25 | 50.93 | humidity | 90.0 | 10 | < th | dose independent | rect. | 7 | 5 |
| 26 | 50.97 | radiation | 10.0 | 10 | > th | dose independent | rect. | 6 | 6 |
| 44 | 51.11 | radiation | 10.0 | 90 | > th | dose independent | rect. | 6 | 6 |
| 65 | 51.37 | radiation | 1.0 | 270 | < th | dose independent | sin | 7 | NA |
| 97 | 51.53 | radiation | 10.0 | 90 | > th | dose independent | rect. | 17 | 21 |
| 151 | 51.74 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 153 | 51.77 | humidity | 90.0 | 10 | < th | dose independent | rect. | 7 | 7 |
| 154 | 51.79 | radiation | 10.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 157 | 51.81 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 170 | 51.87 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 23 | 17 |
| 223 | 52.16 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 17 |
| 260 | 52.36 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 261 | 52.37 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 15 |
| 266 | 52.41 | humidity | 90.0 | 90 | < th | dose independent | rect. | 20 | 16 |
| 284 | 52.47 | humidity | 90.0 | 90 | < th | dose independent | rect. | 18 | 18 |
| 286 | 52.48 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 303 | 52.56 | humidity | 80.0 | 10 | > th | dose independent | sin | 5 | NA |
| 309 | 52.58 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 17 |
| 316 | 52.61 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 328 | 52.68 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 22 | 16 |
| 333 | 52.72 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 22 | 8 |
| 346 | 52.79 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 2 |
| 349 | 52.79 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 22 | 8 |
| 392 | 52.87 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 394 | 52.87 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 412 | 52.94 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 23 | 9 |
| 467 | 53.03 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 474 | 53.05 | humidity | 80.0 | 10 | < th | dose independent | rect. | 4 | 8 |
| 488 | 53.10 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 15 |
| 503 | 53.15 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 11 |
| 521 | 53.21 | humidity | 90.0 | 90 | < th | dose independent | rect. | 23 | 13 |
| 549 | 53.25 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 16 |
| 556 | 53.29 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 10 | 8 |
| 557 | 53.29 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 18 |
| 590 | 53.31 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 14 |
| 593 | 53.32 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 6 |
| 596 | 53.33 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 5 |
| 605 | 53.35 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 1 | 7 |
| 612 | 53.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 15 |
| 614 | 53.37 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 5 |
| 615 | 53.37 | radiation | 10.0 | 10 | < th | dose independent | rect. | 1 | 17 |
| 616 | 53.37 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 622 | 53.39 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 1 | 17 |
| 642 | 53.44 | radiation | 40.0 | 90 | < th | dose independent | rect. | 12 | 19 |
| 649 | 53.46 | wind | 7.0 | 10 | < th | dose independent | rect. | 7 | 5 |
| 653 | 53.47 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 654 | 53.47 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 5 |
| 655 | 53.47 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 678 | 53.50 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 684 | 53.51 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 687 | 53.51 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 8 |
| 690 | 53.52 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 16 |
| 701 | 53.54 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 7 |
| 712 | 53.57 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 8 |
| 713 | 53.57 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 11 |
| 723 | 53.59 | radiation | 10.0 | 270 | < th | dose independent | rect. | 22 | 9 |
| 726 | 53.59 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 18 |
| 730 | 53.59 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 735 | 53.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 16 |
| 738 | 53.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 16 |
| 759 | 53.65 | wind | 7.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 774 | 53.67 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 13 | 19 |
| 781 | 53.69 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 16 |
| 785 | 53.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 2 |
| 786 | 53.70 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 790 | 53.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 791 | 53.71 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 7 | 5 |
| 795 | 53.71 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 803 | 53.73 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 2 |
| 806 | 53.73 | wind | 5.0 | 90 | < th | dose independent | rect. | 7 | 18 |
| 808 | 53.73 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 2 |
| 823 | 53.76 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 16 |
| 827 | 53.76 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 12 | 19 |
| 833 | 53.78 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 2 |
| 835 | 53.78 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 8 |
| 844 | 53.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 2 |
| 846 | 53.80 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 2 |
| 847 | 53.80 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 2 |
| 848 | 53.80 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 2 |
| 850 | 53.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 22 |
| 905 | 53.86 | radiation | 40.0 | 270 | < th | dose independent | rect. | 7 | 2 |
| 909 | 53.87 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 912 | 53.87 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 913 | 53.87 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 1 | 6 |
| 914 | 53.87 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 19 |
| 921 | 53.88 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 16 |
| 928 | 53.88 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 16 |
| 933 | 53.90 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 1 | 7 |
| 944 | 53.91 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 950 | 53.92 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 952 | 53.93 | wind | 1.0 | 10 | > th | dose independent | rect. | 7 | 5 |
| 955 | 53.93 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 957 | 53.93 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 3 | 15 |
| 961 | 53.94 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 19 |
| 980 | 53.95 | humidity | 90.0 | 10 | < th | dose dependent | sin | 7 | NA |