FiT-DB / Search/ Help/ Sample detail

Os12g0291100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Petunia ribulose 1,5-bisphosphate carboxylase small subunit mRNA (clone pSSU 51), partial cds. (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 17 (0.0164) R2 : 0.475
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.702 (0.0345) R2dN8 : 0.614 R2N8 : 0.475
σ : 0.309
deviance : 43.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.81 0.261 17 0.101 0.407 0.107 0.562 0.631 -0.701 22.1 30.33 1487 -- --
31.67 0.262 17 0.0241 0.416 0.119 0.571 -- -0.728 22.2 31.2 1488 -- --
31.99 0.263 17 0.0836 0.406 0.106 -- 0.661 -0.696 21.9 30.33 1434 -- --
32.89 0.267 17 0.0132 0.403 0.142 -- -- -0.739 22 32.26 1489 -- --
38.1 0.287 17 0.0637 -- 0.358 -- 0.779 -0.73 -- 21.01 980 -- --
32.4 0.267 17 0.0341 0.411 -- 0.572 -- -0.7 22.2 -- -- -- --
33.67 0.272 17 0.0124 0.411 -- -- -- -0.701 22 -- -- -- --
38.75 0.29 17 -0.0123 -- 0.342 -- -- -0.757 -- 18.19 941 -- --
32.87 0.267 17 -- 0.409 0.141 -- -- -0.731 22 32.38 1489 -- --
43.82 0.309 17 0.0174 -- -- -- -- -0.7 -- -- -- -- --
33.68 0.271 17 -- 0.411 -- -- -- -0.702 22 -- -- -- --
38.75 0.29 17 -- -- 0.346 -- -- -0.759 -- 17.48 952 -- --
43.83 0.309 17 -- -- -- -- -- -0.702 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.33 humidity 90.0 14400 > th dose dependent rect. 7 1
2 29.33 humidity 90.0 14400 > th dose dependent rect. 6 4
4 29.40 wind 3.0 43200 < th dose dependent rect. 4 3
7 29.51 wind 3.0 43200 < th dose dependent rect. 3 5
8 29.52 humidity 90.0 14400 > th dose independent rect. 6 2
9 29.52 precipitation 0.1 14400 < th dose independent rect. 3 2
10 29.52 precipitation 0.1 14400 < th dose dependent rect. 3 2
15 29.53 wind 3.0 43200 < th dose dependent rect. 1 6
19 29.55 precipitation 0.1 14400 > th dose independent rect. 3 2
23 29.56 precipitation 0.1 14400 > th dose dependent rect. 2 4
28 29.57 precipitation 0.1 14400 > th dose dependent rect. 2 6
29 29.57 precipitation 0.1 14400 > th dose dependent rect. 2 12
34 29.58 precipitation 0.1 14400 > th dose dependent rect. 2 8
40 29.60 precipitation 0.1 14400 > th dose dependent rect. 2 14
45 29.61 precipitation 0.1 14400 > th dose dependent rect. 23 7
46 29.61 precipitation 0.1 14400 > th dose dependent rect. 23 9
48 29.61 precipitation 0.1 14400 > th dose dependent rect. 23 15
54 29.62 precipitation 0.1 14400 > th dose dependent rect. 23 18
62 29.64 wind 9.0 14400 < th dose independent rect. 10 1
72 29.64 precipitation 0.1 14400 > th dose dependent rect. 23 11
74 29.65 precipitation 0.1 14400 > th dose independent rect. 2 6
75 29.65 precipitation 0.1 14400 < th dose independent rect. 2 6
78 29.65 precipitation 0.1 14400 < th dose dependent rect. 2 6
102 29.69 humidity 90.0 14400 < th dose independent rect. 6 3
113 29.70 precipitation 0.1 14400 > th dose independent rect. 2 8
114 29.70 precipitation 0.1 14400 < th dose independent rect. 2 8
120 29.70 precipitation 0.1 14400 < th dose dependent rect. 2 8
143 29.73 humidity 80.0 14400 < th dose independent rect. 9 2
144 29.73 precipitation 0.1 14400 < th dose independent rect. 23 7
145 29.73 precipitation 0.1 14400 > th dose independent rect. 23 9
146 29.73 precipitation 0.1 14400 > th dose independent rect. 23 18
148 29.73 precipitation 0.1 14400 < th dose dependent rect. 23 7
154 29.74 precipitation 0.1 14400 > th dose independent rect. 23 7
155 29.74 precipitation 0.1 14400 < th dose independent rect. 23 9
156 29.74 precipitation 0.1 14400 < th dose independent rect. 23 18
160 29.74 precipitation 0.1 14400 < th dose dependent rect. 23 9
163 29.74 precipitation 0.1 14400 < th dose dependent rect. 23 18
166 29.75 precipitation 0.1 14400 > th dose independent rect. 2 15
167 29.75 precipitation 0.1 14400 < th dose independent rect. 2 15
171 29.75 precipitation 0.1 14400 < th dose dependent rect. 2 15
183 29.77 humidity 80.0 14400 > th dose independent rect. 9 1
203 29.78 precipitation 0.1 14400 > th dose independent rect. 23 11
205 29.78 humidity 90.0 14400 > th dose dependent sin 1 NA
207 29.78 humidity 90.0 14400 > th dose dependent rect. 3 7
212 29.79 precipitation 0.1 14400 < th dose independent rect. 2 12
215 29.79 wind 3.0 43200 < th dose dependent rect. 6 1
220 29.79 precipitation 0.1 14400 < th dose dependent rect. 2 12
243 29.81 precipitation 0.1 14400 > th dose independent rect. 2 12
264 29.83 humidity 90.0 14400 > th dose dependent rect. 3 14
265 29.84 wind 3.0 43200 < th dose independent rect. 5 3
297 29.86 precipitation 0.1 14400 > th dose independent rect. 23 15
298 29.86 precipitation 0.1 14400 < th dose independent rect. 23 15
302 29.86 precipitation 0.1 14400 > th dose dependent sin 5 NA
306 29.86 precipitation 0.1 14400 < th dose dependent rect. 23 15
309 29.86 humidity 90.0 14400 > th dose dependent rect. 2 19
363 29.89 humidity 90.0 14400 > th dose dependent rect. 3 11
390 29.91 wind 3.0 43200 > th dose independent rect. 5 3
392 29.91 humidity 90.0 14400 > th dose independent rect. 6 8
393 29.91 humidity 80.0 4320 > th dose independent rect. 21 8
454 29.94 humidity 90.0 14400 > th dose independent rect. 3 11
469 29.95 wind 9.0 14400 > th dose independent rect. 10 1
489 29.96 wind 3.0 43200 > th dose independent rect. 7 1
492 29.96 wind 9.0 14400 > th dose independent rect. 7 4
509 29.96 humidity 70.0 14400 > th dose dependent rect. 10 1
536 29.97 wind 1.0 43200 > th dose dependent rect. 5 2
553 29.98 humidity 80.0 4320 > th dose independent rect. 21 5
554 29.98 humidity 80.0 14400 < th dose independent rect. 9 5
555 29.98 wind 3.0 43200 < th dose independent rect. 1 7
611 29.99 humidity 90.0 14400 > th dose independent rect. 3 14
659 30.01 precipitation 0.1 14400 > th dose independent sin 5 NA
660 30.01 precipitation 0.1 14400 < th dose independent sin 5 NA
671 30.01 precipitation 0.1 14400 < th dose dependent sin 5 NA
690 30.02 humidity 80.0 14400 > th dose independent rect. 8 8
704 30.02 humidity 90.0 14400 > th dose dependent rect. 3 1
714 30.02 humidity 90.0 14400 > th dose dependent rect. 20 14
718 30.03 humidity 90.0 14400 > th dose independent sin 3 NA
719 30.03 humidity 80.0 4320 > th dose independent rect. 23 1
723 30.03 humidity 80.0 4320 > th dose independent rect. 21 3
773 30.04 humidity 70.0 14400 > th dose dependent rect. 9 6
785 30.04 humidity 90.0 14400 > th dose dependent rect. 15 19
799 30.05 humidity 90.0 14400 < th dose independent rect. 6 8
805 30.05 humidity 80.0 14400 > th dose dependent rect. 13 1
838 30.06 wind 3.0 43200 > th dose independent rect. 1 7
872 30.06 humidity 90.0 14400 > th dose dependent rect. 6 22
874 30.06 humidity 90.0 14400 > th dose dependent rect. 19 22
882 30.07 humidity 90.0 14400 < th dose independent rect. 3 11
969 30.09 wind 9.0 14400 > th dose dependent rect. 10 1